Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1322 347 2e-90 seq698 196 9e-45 seq147 116 7e-21 >seq1322 Length=3124 Score = 347 bits (384), Expect = 2e-90 Identities = 563/803 (70%), Gaps = 26/803 (3%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| || || ||||||| ||| ||| ||| |||||||| | || | || |||||| Sbjct 2892 CTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAA-ATTTTTGAA 2834 Query 49633 CTATCAATACATAT-AATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | | | | |||| ||||||| ||| ||||||||||| | ||| || ||||||||| Sbjct 2833 CAACCTAAACATTCCAATAATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTT 2774 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | | |||| | ||| || || | |||| | ||| Sbjct 2773 GAATTCATCCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTTTCAACTTCA 2714 Query 49752 acagcttgtttaattatcataattatattattttttgataatttatatt-taatatgatt 49810 ||||||| ||||| || | | | | | || || |||||||| || ||||| | Sbjct 2713 ACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAACT- 2655 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 |||||||||||| |||||| |||||||| || || || ||| || | |||||| Sbjct 2654 ---ATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATT 2598 Query 49871 ACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 ||||||||| | ||| || ||| || || | ||||||| |||||| |||| ||||| Sbjct 2597 ACTAAAAGTAAGTCCATGTAATTTATTCTGT-TTTTTAAACCAAAAAATTGCACAAAAAC 2539 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 ||| | ||| | |||||| || ||||| ||| ||||| |||||| || ||| || | Sbjct 2538 TACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAA--ATGA 2481 Query 49990 ATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049 |||| | ||| |||||| ||| ||||||| |||||| || || | | ||||||| Sbjct 2480 ATTTGT-ATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTATAT 2422 Query 50050 TTTCTATAGCTTTAAAT-AATTCA-----tttttttCATNNNNNNNNNNNNNNNNNNNNN 50103 |||| ||||| | |||| |||| | | ||| |||| Sbjct 2421 TTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCAT------CTTTTATATAATTAT 2368 Query 50104 NNATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAA 50163 || | |||| ||| |||| ||||||| ||| | |||||||||||||| |||| Sbjct 2367 CAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAA 2308 Query 50164 ATTGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTC-AACTAAATTCTCAGAT 50222 ||| | | ||||||| | |||||||| || || | | | | | ||||| || || Sbjct 2307 ATTTTTTAGCTTCTGTAATTTGAACTTCTCTTAA-AAACTTACTAGCCAAATTTTCTAAT 2249 Query 50223 ACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTA 50282 || ||||||||| ||||| || ||||||||||| | ||||||||||||||||||||| Sbjct 2248 ACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTT 2189 Query 50283 TCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAA 50342 || ||||| ||||| || || | ||| |||||||||||| |||||| ||||||| Sbjct 2188 TCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAA 2129 Query 50343 AATGATGCTACGGATTTTTTATA 50365 ||||||||| | | ||||||||| Sbjct 2128 AATGATGCTTCTGCTTTTTTATA 2106 >seq698 Length=7480 Score = 196 bits (216), Expect = 9e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | ||||| |||||||||||||||| ||||| ||| |||||||| ||| Sbjct 5865 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 5924 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||||| | |||| |||||||| || || ||||| |||||||| || ||||| |||||| Sbjct 5925 AATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 5984 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| |||||||| ||||| |||||||| || | ||| || ||||| || Sbjct 5985 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACA 6044 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || ||||| || || || || ||||| | ||||||||||||| Sbjct 6045 TCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 6092 Score = 194 bits (214), Expect = 3e-44 Identities = 182/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || ||| ||||| | ||||| ||||| |||||||||| ||||| ||| |||||||| Sbjct 5399 AAAACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATC 5458 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||||||||| | |||| |||||||| || || ||||| |||||||| || ||||| || Sbjct 5459 TGATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGG 5518 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 |||||||||||| |||||||| ||||| |||||||| || | ||| || ||||| Sbjct 5519 TGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTC 5578 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || ||||| || || || || ||||| | ||||||||||||| Sbjct 5579 AACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 5630 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | ||||| ||||| |||||||||| ||||| || |||||||| ||| Sbjct 5634 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGAT 5693 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||||| | |||| |||||||| || || ||||| |||||||| || ||||| ||||| Sbjct 5694 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGA 5753 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| |||||||| ||||| || ||||| || | ||| || ||||| || Sbjct 5754 ATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAACA 5813 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || ||||| || || || || ||||| | ||||||||||||| Sbjct 5814 TCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 5861 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | ||||| ||||||||||| |||| || || ||| |||||||| || Sbjct 6096 CCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAAT 6155 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||||| | |||| |||||||| || || ||||| |||||||| || ||||| |||||| Sbjct 6156 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 6215 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| |||||||| ||||| |||||||| || | ||| || || || || Sbjct 6216 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGACTCAACA 6275 Query 192490 TCTAGAGTAATGGTTTTACC 192509 || | || || ||||| || Sbjct 6276 TCCAAGGTGATCGTTTTTCC 6295 >seq147 Length=23875 Score = 116 bits (128), Expect = 7e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| ||||||||||||| ||| ||| | || || |||||||| || ||||| Sbjct 23213 TCTTTCTGGATATTATAATCATTTAAAGTTTTTCCACATTCTAATTGTTTTCCTGCAAAA 23272 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 |||||||| |||| || | || ||| |||| ||||| || ||||| ||| | ||| Sbjct 23273 ATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCTTTAATATTT 23332 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 |||| |||| ||||| || || || | ||| ||||| || |||||||||| | | Sbjct 23333 TCAATAGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAATGTTTTTACA 23392 Query 192526 AATATCTGCATTTT 192539 ||||| |||||||| Sbjct 23393 AATATTTGCATTTT 23406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984429230058750