Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1322 340 3e-88 seq698 181 2e-40 seq147 116 7e-21 >seq1322 Length=3124 Score = 340 bits (376), Expect = 3e-88 Identities = 581/844 (69%), Gaps = 18/844 (2%) Strand=Plus/Minus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 |||| || || |||| ||| |||||| ||||||||||||||||||| || || |||| Sbjct 2937 ATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTA 2878 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 ||| ||| ||| ||| |||||||| | | || || |||||| | | | | ||| | Sbjct 2877 AATCCATCCAATTAAAAGGATTTTTTGCA-TAAAAAATTTTTGAACAACCTAAACATTCC 2819 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||| ||| || |||||||| | ||| || |||||||| ||||||| || | | Sbjct 2818 AATAATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGAATTCATCCCAATT 2759 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | | | |||| | ||| || || | |||| | ||| ||||||| ||||| Sbjct 2758 AAATCACAAGGTAGAGATTCACATATGAAAGATCTTTCAACTTCAACAGCTTCTTTAACA 2699 Query 39069 atcataattatattattttttgataatttatatt-taatatgattcgcatataGTAAACA 39127 || | | | | | || || |||||||| || ||||| | ||||| |||||| Sbjct 2698 ATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAACT----ATATATTAAACA 2643 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 |||||| |||||||| ||||| || ||| || | ||||||||||||||| | ||| Sbjct 2642 ATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCC 2583 Query 39188 -TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 || ||| || || | ||||||| |||||| |||| |||||||| | ||| | || Sbjct 2582 ATGTAATTTATTCTGT-TTTTTAAACCAAAAAATTGCACAAAAACTACCACTAAATAGTA 2524 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATCATCTAA 39304 |||| || ||||| ||| ||||| |||||| || ||| || |||| |||||| | Sbjct 2523 TACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAA--ATGAATTTGTATCATTT-- 2468 Query 39305 AATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 39364 ||||| ||| |||||| |||||| || || | | ||||||||||| ||||| | Sbjct 2467 -ATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATAGCATG 2409 Query 39365 AAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACAT 39424 |||||| | | ||| | Sbjct 2408 AAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAAGTAAACTGTACGT 2349 Query 39425 TTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATA 39484 ||| ||||||| ||| | |||||||||||||| ||||||| | ||||||| | Sbjct 2348 TTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAAT 2289 Query 39485 CTGAACTTCGGAAAAGAATCGTTC-AACTAAATTCTCAGATACAATACCATCAGATGCTG 39543 |||||||| || || | | | | | ||||| || |||| ||||||||| |||| Sbjct 2288 TTGAACTTCTCTTAA-AAACTTACTAGCCAAATTTTCTAATACTATACCATCACTAGCTG 2230 Query 39544 CGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG 39603 | || ||||||||||||| ||||||||||||||||||||| || ||||| ||||| || Sbjct 2229 CAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAAT 2170 Query 39604 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTT 39663 || | ||| |||||||||||| |||||| ||||||||| |||||| | | ||||| Sbjct 2169 CTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTT 2110 Query 39664 TATA 39667 |||| Sbjct 2109 TATA 2106 >seq698 Length=7480 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | |||||| |||||||||||||||| ||||| || |||||||||||| Sbjct 5865 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 5924 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | | || |||||||| || || ||||| |||||||| || || || |||||| Sbjct 5925 AATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 5984 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||| |||||||| ||||| |||||||| || ||||| || ||||| || Sbjct 5985 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACA 6044 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| || || || || ||||| | |||||||||||| Sbjct 6045 TCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 6092 Score = 179 bits (198), Expect = 7e-40 Identities = 179/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||| ||||| | |||||| ||||| |||||||||| ||||| || |||||||| Sbjct 5399 AAAACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATC 5458 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 |||||| | || | | || |||||||| || || ||||| |||||||| || || || || Sbjct 5459 TGATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGG 5518 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 |||||||||||| |||||||| ||||| |||||||| || ||||| || ||||| Sbjct 5519 TGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTC 5578 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || ||||| || || || || ||||| | |||||||||||| Sbjct 5579 AACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 5630 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | |||||| ||||| |||||||||| ||||| || |||||||||||| Sbjct 5634 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGAT 5693 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | | || |||||||| || || ||||| |||||||| || || || ||||| Sbjct 5694 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGA 5753 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||| |||||||| ||||| || ||||| || ||||| || ||||| || Sbjct 5754 ATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAACA 5813 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| || || || || ||||| | |||||||||||| Sbjct 5814 TCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 5861 Score = 131 bits (144), Expect = 3e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | |||||| ||||||||||| |||| || || || |||||||| || Sbjct 6096 CCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAAT 6155 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | | || |||||||| || || ||||| |||||||| || || || |||||| Sbjct 6156 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 6215 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||| |||||||| ||||| |||||||| || ||||| || || || || Sbjct 6216 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGACTCAACA 6275 Query 172023 TCTAGAGTAATGGTTTTACC 172042 || | || || ||||| || Sbjct 6276 TCCAAGGTGATCGTTTTTCC 6295 >seq147 Length=23875 Score = 116 bits (128), Expect = 7e-21 Identities = 139/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCA-TCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||||||||||| ||||| | ||| || || |||||||| || |||||||||||||| Sbjct 23222 ATATTATAATCATTTAAAG-TTTTTCCACATTCTAATTGTTTTCCTGCAAAAATTAATCT 23280 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||| ||| | || ||| |||| ||||| || ||||| ||| | ||| ||||| Sbjct 23281 TTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCTTTAATATTTTCAATAGT 23340 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 |||| ||||| || || || | ||| ||||| || |||||||||| | ||||| || Sbjct 23341 ATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAATGTTTTTACAAATATTTG 23400 Query 172067 CATTTT 172072 |||||| Sbjct 23401 CATTTT 23406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905090460345000