Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq358 194 5e-44 seq700 129 2e-24 seq865 100 8e-16 seq148 91.5 4e-13 seq458 84.2 6e-11 >seq358 Length=14169 Score = 194 bits (214), Expect = 5e-44 Identities = 359/516 (70%), Gaps = 13/516 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||||| | || | ||||| ||||||||||| ||| || || || Sbjct 10054 CTATCAAATCTACCAGGTCTTGTAATAGCTGGATCTAATATATCTATTCTATTAGTCCCT 9995 Query 288910 GCCAATACAACAA---TAG-ATTCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATT 288963 || ||||| | | || ||| | | | | |||||||||||| || || ||| Sbjct 9994 GCTAATACTATTACTTTATCATTTGATGTA-TGAAATCCATCCAT--TTCAACAAGCATT 9938 Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCt 289022 ||||| | ||| | ||| |||||||||||| |||| || | ||| | | | || | Sbjct 9937 TGATTTAATGTATTTTCTCTTTCATCATTTCCTCCTCCTGCAAAACCACCTTTTGATCTT 9878 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 ||| || ||||||||||| |||||||| || || || | | | || |||| || ||| || Sbjct 9877 TTTCTT-CCAACAGCATCTATTTCGTCTATAAATATAATAGAAGGTGAATGTTTTCTTGC 9819 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 ||||||||||||||| || | |||| |||| |||||| | | ||||| ||| || Sbjct 9818 TTGTGCAAATAATTCTCTAACCCTAGATGGACCAATTCCAACAAATACTTCTATAAAATC 9759 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 | | | || | || |||| |||||||||||| |||||||| || | || || || Sbjct 9758 ACTACCACTTATGTTAAAAAATGGTACATTTGCTTCTCCTGCTACAGCTTTAGCTAGTAG 9699 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| || ||||| || |||| || ||||| | |||| || |||| |||||| || Sbjct 9698 TGTTTTTCCTGTACCTGGTGCACCACATAATAAAGCTCCTTTAGGTATTTTTGCACCTAA 9639 Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 | | |||||| || | |||||||| || || | |||| || ||| | |||||| Sbjct 9638 ATTTTCATATTTAGTAGAATTTTTTAAAAAATCAACGAATTCCATAATTTCTTCTTTTGC 9579 Query 289323 CT-CATCACATCCTGCTACATCAGCAAAAGTAATAT 289357 | ||| | || || ||| |||||||||| || Sbjct 9578 TTGTTTCATA-CCAGCAACACTTGCAAAAGTAACAT 9544 >seq700 Length=13977 Score = 129 bits (142), Expect = 2e-24 Identities = 426/657 (65%), Gaps = 9/657 (1%) Strand=Plus/Plus Query 155891 CCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAA 155950 |||| ||||||| | | || | | |||||| | ||| |||||| |||||| || Sbjct 4926 CCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAAAA 4985 Query 155951 AAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTC 156010 | || || || | | || || | || ||||| || | | |||| || || Sbjct 4986 TAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCAAA 5045 Query 156011 AATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACC 156067 ||||| | ||| ||| || | ||| | ||||| || || || || || ||| Sbjct 5046 TATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACC 5105 Query 156068 CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAA-TAATACCATTGG 156126 ||||||||||| | ||| || | || || || | || ||| || | |||| || || | Sbjct 5106 TTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTTG 5164 Query 156127 AAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTC 156186 | | ||||| ||||| | |||| ||| | || | || || | || | Sbjct 5165 ATATACCATTTGTTCCTCTTATATATGAATTTTGTCCACGTATATCTTGTACTGCTACAC 5224 Query 156187 CAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTT 156246 |||||||||||| |||| || ||| |||| ||||| || | ||||| |||| Sbjct 5225 CAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATTCCTT 5284 Query 156247 CAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTC 156306 |||| ||||| ||| ||| |||||| | | || || | || |||| |||||| | Sbjct 5285 CAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGTGTCC 5344 Query 156307 CAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATG 156366 | | || |||| ||| ||||||||||| ||||||| || | ||||| || |||| Sbjct 5345 CTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATATG 5404 Query 156367 TCTCCTTAAT--CTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACAT 156424 | || |||| || || |||| | || |||| || || || ||||| || Sbjct 5405 TTTC--TAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATCAA 5462 Query 156425 ATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGT 156484 ||| || || | |||| ||| || ||| |||| | |||| | ||| | || Sbjct 5463 ATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAACGT 5522 Query 156485 TTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAATCATTTCATCTAA 156541 |||||| || ||||||||| | ||||||||| | ||||||||| || || ||| Sbjct 5523 TTTAAAACCAAAATAATCATAATTAAAATCACGTGTATAATCAATCTCTTTATTTAA 5579 >seq865 Length=65196 Score = 100 bits (110), Expect = 8e-16 Identities = 269/403 (67%), Gaps = 10/403 (2%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| ||||| | | | ||| || ||||| ||||| ||| || ||||| Sbjct 54732 CTGTCAAATCTACCTGGTCTAAGTAAAGCACTATCTAACGTATCGATTCTATTCGTTGCA 54791 Query 288910 GCCAATACAACAATAGATTCGGT-TTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 | | || | ||| | | || ||||| |||||||||||| | ||| | |||||| Sbjct 54792 CCTATCACCATTATATGTACAGTATTGCT-AAATCCATCCATTTCTACTAATAATTGATT 54850 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTG--AACCTC-TTGAATCACCC-GAATCGCTCCttt 289024 || ||||| || ||| || | | | || | || ||| | || ||| || || | Sbjct 54851 TAGCGTTTGATCATGTTC-TCTCTGGCCAGCCCCATTAAATGATCCAGAA---CTTCTCT 54906 Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084 | || | ||| |||||||| ||||| |||| | | || | | | ||| ||| Sbjct 54907 TCCCTCCTATAGCGTCAATTTCATCAATAAAAACAATTGATGGTGCAACTGATCTTGCAT 54966 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||||||||| | ||||| | |||||| | || ||||| ||||||| |||||||| Sbjct 54967 GTGCAAATAACTGTCTTATTCTTTTTGCTCCTTGTCCTACATATATTTCTATAAATTCAG 55026 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | || | ||| ||| ||||| ||||| |||||||||||| || | | | Sbjct 55027 GACCAGAAGTATAAATATATGGAACATTGGCTTCTGTTGCTACTGCCCTTGCTAACATGG 55086 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 | ||||||| ||| |||||||| ||| | ||| ||||| || Sbjct 55087 TTTTACCTGATCCTGGTGGTCCTACTAGCAAAACACCCTTAGG 55129 >seq148 Length=40499 Score = 91.5 bits (100), Expect = 4e-13 Identities = 261/395 (66%), Gaps = 15/395 (4%) Strand=Plus/Minus Query 380962 AATGTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACC 381021 ||||| | ||| ||| | | ||||| | | | || ||||||||| | | || Sbjct 34412 AATGTGAGAATATGGGAAGCAAATGGAACTAGAGAATTTTTAGATAATAGAAATTTATTT 34353 Query 381022 AATAACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCC 381081 ||| |||| | |||| | ||||| ||||| || ||||| |||||||||||| || Sbjct 34352 GATAGAGAAGTAAATGATTTAGGTCCAATTTATGGTTTTCAATGGAGACATTTTGGAGCT 34293 Query 381082 GATTATGATAAT-TGTGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATAT 381140 || ||| ||| ||| || | ||||| | ||| || | || || ||||| |||| Sbjct 34292 GAATATACAAATATGT-ATGATAATTATGATAATAAAGGAATTGATCAACTAAAAAATAT 34234 Query 381141 CATAGACCAGCTAAAAAATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGCGTG 381200 ||| | | |||||||| ||| || || | | | | | ||| || ||| || Sbjct 34233 TATAAATTTGATAAAAAAT---GAACCATTAAGTAGAAG---AATTATTTTGTGTGCATG 34180 Query 381201 GAATCCTTGCCAGATTA--ATGATATGGCTTTACCACCTTGCCATATTTTATGCCAGTTC 381258 ||| | | |||| || | ||||| ||||||||||| |||||||||||||| || Sbjct 34179 GAA--CGTAAAGGATTTGGATAAAATGGCATTACCACCTTGTCATATTTTATGCCAATTT 34122 Query 381259 AATGTTTCGGCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTAGCGGTGATGTTGGT 381318 || ||| | ||| || ||| ||| | ||||| || ||||| | || Sbjct 34121 TATATTTTCGATGG---GAAATTATCATGTATCATGTATCAACGATCTTGTGATTTAGGG 34065 Query 381319 CTGGGTGTTCCATTCAATATTGCTTCGTATTCTAT 381353 || |||||||| ||||||||||| || || || || Sbjct 34064 CTTGGTGTTCCCTTCAATATTGCCTCTTACTCAAT 34030 >seq458 Length=50586 Score = 84.2 bits (92), Expect = 6e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 302487 TGGGTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTAC 302546 ||| ||||| || || || || || || ||||||| || | || | | ||| | ||| Sbjct 14389 TGGATCAATACCATCTTCACCATATAAAAACTGAATAATAGTATTATCTTCATTACGTAC 14448 Query 302547 GGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATA 302606 || ||||||| | |||| |||||||| || ||||||| | || ||||| Sbjct 14449 AGTACCATCATAATGTAAAATAACAGATTCCATACATTTAATTAAACATCTTTGTATATA 14508 Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||| | ||| ||||||||||| ||||||||||| || | | |||| |||| ||| Sbjct 14509 ACCAGATTTAGCAGTTTTTACAGCAGTATCAATTAGTCCTTCTCTACCAGACATACAATG 14568 Query 302667 GAAGAA 302672 || || Sbjct 14569 AAAAAA 14574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471741697906425