Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq100 93.3 5e-14 seq688 84.2 3e-11 >seq100 Length=37849 Score = 93.3 bits (102), Expect = 5e-14 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 194587 AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATG 194646 ||||| ||||| || || |||||||| || | | ||||| ||||| | ||||| || Sbjct 23574 AAAATATTTATTGGTCCTACTTATTATCAGAGATTAAAACATATGGTAGAAGATAAGATA 23633 Query 194647 CATGCTAGAAGTCATGGGCAAGTAACTA-CTTTACATCGACAACCAAATTGTGGTCGTTC 194705 |||||||||||| || | |||||| |||| ||||||||| ||| | || Sbjct 23634 CATGCTAGAAGTAGAGGACCTTTAACTATGATTAC-GAGACAACCAACAGAAGGTAGATC 23692 Query 194706 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTAT 194750 | || ||||||| | ||||||| |||||||||| ||||||||| Sbjct 23693 ACGAGATGGAGGTCTCCGATTTGGTGAAATGGAAAGAGACTGTAT 23737 >seq688 Length=64408 Score = 84.2 bits (92), Expect = 3e-11 Identities = 182/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 194581 GAAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGAT 194640 |||| | | |||||||| || || | ||||| || || |||||||||||| ||||| Sbjct 13033 GAAACTTATATTTTTATGGGACCTATATATTATCAAAAACTAAAACACATGGTTCAGGAT 13092 Query 194641 AAAATGCATGCTAGAAGT-CATGGGCAAG-TAACTACTTTACATCGACAACCAAATTGTG 194698 ||||| |||||||| | | | |||| || ||| || | ||||||||| | | Sbjct 13093 AAAATACATGCTAGGGCTAGAGGACCAAGACAATTAC--TAACTAGACAACCAACTGAAG 13150 Query 194699 GTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCC 194758 || | || ||| ||||| ||| || ||||||||||||||| ||| || | | | Sbjct 13151 GTAGATCAAAAGAAGGAGGATTACGACTTGGAGAAATGGAAAGAGATTGCTTAATTGCAT 13210 Query 194759 ATGGTGCTACTCAAT-TCTTAAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTC 194817 |||||| || |||| | || ||||||| || | || | |||| | | | || Sbjct 13211 ATGGTGTTA-GCAATCTACTACTTGAAAGATTGATGCTGAGTAGTGATGTGTGTGATGTT 13269 Query 194818 GATGTTTGCACAGAATGTGGTATGAT 194843 || ||||| ||| ||||| ||||| Sbjct 13270 TATATTTGCCAAGACTGTGGCATGAT 13295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632457777867000