Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq698 131 2e-25 >seq698 Length=7480 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || || || || |||||||| || ||| | | Sbjct 6091 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATCG 6032 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| || || ||||| || ||||||||||| |||||||| Sbjct 6031 GATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAG 5972 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || || ||||| || || || |||||||| |||| | |||||||||||| Sbjct 5971 CAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATAAC 5912 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAA 24935 || || || ||||| || |||| || || || ||||| | ||||| |||| Sbjct 5911 ATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGGAGGAA 5860 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || || || || || ||||| || ||| | | Sbjct 5629 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG 5570 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| || || ||||| || ||||||||||| |||||||| Sbjct 5569 GATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAG 5510 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || || ||||| || || || |||| ||| |||| | |||||||||||| Sbjct 5509 CAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAAC 5450 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || ||||||| || || ||||| | ||||| Sbjct 5449 ATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 5403 Score = 116 bits (128), Expect = 3e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || || || || || ||||| || ||| | | Sbjct 5860 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG 5801 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || || | ||| | ||| || ||||| || |||||||| || || ||||| Sbjct 5800 GATACCATTGAGAATGTTAAGGCGAAA-ATTCAAGATAAGGAAGGAATTCCACCAGATCA 5742 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | || || ||||| || || || |||| ||| |||| | ||||||||||| Sbjct 5741 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 5682 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAA 24935 ||| || || ||||| || ||||||| || || ||||| | ||||| |||| Sbjct 5681 CATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGAGGAA 5629 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || || ||||| || ||||||||||| |||||||| ||| | || || ||||| || || Sbjct 6238 AAAATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAG 6179 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||| ||| |||| | | ||||||||||| ||||||||||| || |||| Sbjct 6178 CAATTGGAAGATGGAAGAACATTATTGGATTATAACATCCAAAAGGAATCTACCTTACAT 6119 Query 24908 TTGGTGTTGCGATTGCGCGGAGGCGGAA 24935 || || || ||||| | ||||| |||| Sbjct 6118 TTAGTCTTACGATTAAGAGGAGGAGGAA 6091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449874964527000