Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq698 178 2e-39 seq147 143 4e-29 >seq698 Length=7480 Score = 178 bits (196), Expect = 2e-39 Identities = 177/227 (78%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| ||||| | ||||| || |||||||| || || || | ||||| ||| ||| Sbjct 6090 TGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATCG- 6032 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | |||||||| ||||| ||| ||| ||||| || ||||||||||| Sbjct 6031 GATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAG 5972 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || |||||||| || ||||| || ||| ||||| ||| |||||||||| Sbjct 5971 CAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATAAC 5912 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || || |||||||| ||| | |||||||| ||||||||||||||||| Sbjct 5911 ATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGG 5865 Score = 174 bits (192), Expect = 2e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| ||||| | ||||| || |||||||| || || || | ||||| ||| ||| Sbjct 5628 TGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG- 5570 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | |||||||| ||||| ||| ||| ||||| || ||||||||||| Sbjct 5569 GATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAG 5510 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || |||||||| || ||||| || ||| ||||| ||| |||||||||| Sbjct 5509 CAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAAC 5450 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || || |||||||| ||| | || ||||| |||||||||||||||||| Sbjct 5449 ATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGT 5402 Score = 172 bits (190), Expect = 9e-38 Identities = 176/227 (78%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| ||||| | ||||| || |||||||| || || || | ||||| ||| ||| Sbjct 5859 TGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG- 5801 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || ||||| ||| ||| ||||| |||||||| ||||| Sbjct 5800 GATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAG 5741 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || |||||||| || ||||| || ||| ||||| ||| |||||||||| Sbjct 5740 CAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAAC 5681 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 ||||| |||||||| ||| | || ||||| ||||||||||||||||| Sbjct 5680 ATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 5634 Score = 147 bits (162), Expect = 3e-30 Identities = 159/207 (77%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 146052 TTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAACGATACTATTCAAAATGTAAA 146110 |||| ||||||||| || || | ||||| || ||| ||||| ||| | |||||||| Sbjct 6300 TTAA-AGGAAAAACGATCACCTTGGATGTTGAGTCATCG-GATACCATTGAGAATGTAAA 6243 Query 146111 AAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGG 146170 ||||| ||| ||| ||||| || ||||||||||| |||||| | || |||||||| Sbjct 6242 GGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGG 6183 Query 146171 TAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTAT 146230 || ||||| || ||| ||||| ||| |||||||| || ||||| ||||| || | Sbjct 6182 AAAGCAATTGGAAGATGGAAGAACATTATTGGATTATAACATCCAAAAGGAATCTACCTT 6123 Query 146231 CCATTTAGTATTACGATTAAGAGGAGG 146257 |||||||| ||||||||||||||||| Sbjct 6122 ACATTTAGTCTTACGATTAAGAGGAGG 6096 >seq147 Length=23875 Score = 143 bits (158), Expect = 4e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||||||||| |||||||||||| |||||||||||| | |||| || ||| || | Sbjct 23402 TGCAAATATTTGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATCAGTA- 23344 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| ||||| | ||| ||||| || ||| |||| ||||| | ||| || Sbjct 23343 GATACTATTGAAAATATTAAAGCAAAAATTCAGGATAAGGAAGTAATTCCCCTCGACGAA 23284 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | ||||||||||| ||||||||||| | | ||| |||| ||||||||| Sbjct 23283 CAAAGATTAATTTTTGCAGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATTATAAT 23224 Query 146211 ATACAAAAAGAATCGACT 146228 || || |||||||| ||| Sbjct 23223 ATCCAGAAAGAATCCACT 23206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786126846003000