Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq100 96.9 4e-15 seq688 86.0 8e-12 >seq100 Length=37849 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 193791 AAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATG 193850 ||||| ||||| || || ||||||||||| | | ||||||||||| | ||||| || Sbjct 23574 AAAATATTTATTGGTCCTACTTATTATCAGAGATTAAAACATATGGTAGAAGATAAGATA 23633 Query 193851 CATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTTC 193909 |||||||||||| |||| | |||| |||| ||||||||| ||| | || Sbjct 23634 CATGCTAGAAGTAGAGGACCTTTAACTATGATTAC-GAGACAACCAACAGAAGGTAGATC 23692 Query 193910 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTAT 193954 | || ||||||| | ||||||| |||||||| | ||||||||| Sbjct 23693 ACGAGATGGAGGTCTCCGATTTGGTGAAATGGAAAGAGACTGTAT 23737 >seq688 Length=64408 Score = 86.0 bits (94), Expect = 8e-12 Identities = 127/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 193419 AAAGTTGTTATTGGTCAGTTACGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-AT 193477 |||||| |||| ||||| | |||||||| | || ||||||||| ||||| || || Sbjct 12682 AAAGTTATTATGCGTCAGGCGAGATTACCTGAATTGGGTGATAAATTTAGTTCAAGACAT 12741 Query 193478 GGCCCAAAAAGGAACTTGTGGTATGATTTATTCA-CAAGAAGATATGCCATTTACAGCTT 193536 || | ||||||| | |||| || || || | || ||||||||||| ||||| | | Sbjct 12742 GGAC-AAAAAGGTGTTATTGGTTTG-TTGGTTAATCAGGAAGATATGCCTTTTACTGAAT 12799 Query 193537 CAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTCCATCCAGAATGAC 193591 | || || |||||| | ||||| |||||| || || ||||||| | ||||| Sbjct 12800 CTGGAATATGCCCAGATTTAATTATGAATCCACATGGTTTTCCATCTCGTATGAC 12854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635145642627000