Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq148 91.5 2e-13 >seq148 Length=40499 Score = 91.5 bits (100), Expect = 2e-13 Identities = 403/621 (65%), Gaps = 23/621 (4%) Strand=Plus/Minus Query 180392 ACAACaaaaaaaaTAGTTTATAAAAATA-TTCTTAAAGAATTATTATGGATAATGAAAGG 180450 ||||| || ||| || ||||||| | | || || |||||||| | ||| | || | ||| Sbjct 34502 ACAACCAAGAAATTA-TTTATAAGAGGAATTATTGAAGAATTACTTTGGTTTATAAGAGG 34444 Query 180451 TTTAACAAATTCTAAT---TTGTTAAATGATATTGGTGTTAAAGTGTGGAATGATAATGG 180507 ||||||| ||| ||||||||| | | || | | | | ||| | | ||||| Sbjct 34443 GGAAACAAATGGAAATATTTTGTTAAATAAAAATG---TGAGAATATGGGAAGCAAATGG 34387 Query 180508 TTCGCGTAAGTTTTTAGATTCTTGTGGATTTCATTT--TCGAAAAGAAGGTGATTTAGGA 180565 | | | ||||||||| | | |||| |||| | || ||| | ||||||||| Sbjct 34386 AACTAGAGAATTTTTAGATAATAGAA-ATTT-ATTTGATAGAGAAGTAAATGATTTAGGT 34329 Query 180566 CCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGA-CTGTGATACCAA 180624 ||||||||||| ||||||||||||||| |||||| |||||| | ||| || || Sbjct 34328 CCAATTTATGGTTTTCAATGGAGACATTTTGGAGCTGAATATACAAATATGT-ATGATAA 34270 Query 180625 CTATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTATAGAAACTATAAAAAATAATCC 180684 ||| |||| || || ||| ||| | ||||| | ||||||||| | || Sbjct 34269 TTATGATAATAAAGGAATTGATCAACTAAAAAATATTATAAATTTGATAAAAAATGAACC 34210 Query 180685 CGAATGCCGAAGAATAATCATAGATAGTTGGAATGTATCACAATTACCAGATATGGCTCT 180744 | | ||||||| || | | ||||| ||| | || | ||||| | Sbjct 34209 ATTAAGTAGAAGAATTATTTTGTGTGCATGGAACGTAAAGGATTTGGATAAAATGGCATT 34150 Query 180745 TCCACCATGTCACTGTTTGGTACAATTTTATGTTAGAAAT-AAAATTTATTTAGATTGCC 180803 ||||| ||||| ||| ||||||||| || || || |||| | | | Sbjct 34149 ACCACCTTGTCATATTTTATGCCAATTTTATATTTTCGATGGGAAATTATCATG--TATC 34092 Query 180804 AATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATT 180863 | |||||||| ||||| |||||||| | ||||| || | |||||||| | || | Sbjct 34091 A--TGTATCAACGATCTTGTGATTTAGGGCTTGGTGTTCCCTTCAATATTGCCTCTTACT 34034 Query 180864 CATTTTT--GGTATGTGTTCTCTCAAAGTGGTGCAATTTAACCCCTGGAAAATTTATTCA 180921 || |||| || || | ||| |||| || || ||| |||| | |||| || || Sbjct 34033 CAATTTTCACCTACATGCTTGCTC-AAGT-ATGTAACTTACAACCTGCAGAATTCATACA 33976 Query 180922 CACTTTTGGGGATGTTCATGTATATTCTAACCATATTGACCAATTAAAAATTCAATTAAG 180981 | ||| || ||| ||| ||||| || ||||| || ||||||||||| ||| Sbjct 33975 CGTTTTAGGAAATGCTCACATATATAACAATCATATAGATAGTCTAAAAATTCAACTAAA 33916 Query 180982 CAGAAACCCTTACAAGTTTCC 181002 ||||| || ||| ||||| Sbjct 33915 CAGAATTCCCTACCCTTTTCC 33895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655247031225000