Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq100 87.8 2e-12 >seq100 Length=37849 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 193344 AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATG 193403 ||||| ||||| || || |||||||| || | | ||||| ||||| | ||||| || Sbjct 23574 AAAATATTTATTGGTCCTACTTATTATCAGAGATTAAAACATATGGTAGAAGATAAGATA 23633 Query 193404 CATGCTAGAAGTCATGGGCAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTTC 193462 |||||||||||| || | | |||| |||| ||||||||| ||| | || Sbjct 23634 CATGCTAGAAGTAGAGGACCTTTAACTATGATTAC-GAGACAACCAACAGAAGGTAGATC 23692 Query 193463 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTAT 193507 | || ||||||| | ||||||| |||||||||| ||||||||| Sbjct 23693 ACGAGATGGAGGTCTCCGATTTGGTGAAATGGAAAGAGACTGTAT 23737 Score = 86.0 bits (94), Expect = 8e-12 Identities = 124/172 (72%), Gaps = 6/172 (3%) Strand=Plus/Plus Query 192500 ATTAAATTATCCACAAAAACCACTTGT---TACCACAGATATTGCAAAATTTAATAAATT 192556 |||| | ||||| || | ||||||||| ||||| || ||| | | | || | || Sbjct 22370 ATTATACTATCCCCAGAGACCACTTGTATGTACCAAAGTTATGGAATATCTTCGTT--TT 22427 Query 192557 AGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAA 192616 ||| || ||| |||||| ||||| || |||||||| |||||||| || ||||| Sbjct 22428 AGA-GACCTCCCAGCTGGTATCAATGCAATAGTTGCTATTATGTGCTATACAGGATATAA 22486 Query 192617 CCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTT 192668 ||||||||||||| |||| | || || |||| || || || || |||||| Sbjct 22487 CCAAGAAGACAGTCTTATAATGAACCAATCTTCCATCGACAGGGGTTTATTT 22538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628499577024000