Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq698 210 4e-49 seq147 154 3e-32 >seq698 Length=7480 Score = 210 bits (232), Expect = 4e-49 Identities = 184/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || || | |||||||| | ||||||||||||||| || |||||||| || Sbjct 5402 ACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGA 5461 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| || ||||| | ||| ||||| ||||| |||| |||||| ||||| || || Sbjct 5462 TAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGG 5521 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||||||||||||| || || |||||||| ||||| ||||| | ||| || Sbjct 5522 TATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAAC 5581 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| |||||||| || || ||||||||||||||| Sbjct 5582 ATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 5630 Score = 208 bits (230), Expect = 1e-48 Identities = 183/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || || | |||||||| | |||||||||||||||||| |||||||| ||| Sbjct 5634 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGAT 5693 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| || ||||| | ||| ||||| ||||| |||| |||||| |||||||| || Sbjct 5694 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGA 5753 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||||||||| || || || ||||| ||||| ||||| | ||| || Sbjct 5754 ATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAACA 5813 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| |||||||| || || ||||||||||||||| Sbjct 5814 TCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 5861 Score = 199 bits (220), Expect = 8e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || || | ||||| || | ||||||||||||||| || |||||||| ||| Sbjct 5865 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 5924 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| || || || | ||| ||||| ||||| |||| |||||| ||||| || ||| Sbjct 5925 AATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 5984 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||||||||| || || |||||||| ||||| ||||| | ||| || Sbjct 5985 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACA 6044 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| |||||||| || || ||||||||||||||| Sbjct 6045 TCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 6092 Score = 156 bits (172), Expect = 8e-33 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || || | ||||| || | |||||||| || || || |||||||| || Sbjct 6096 CCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAAT 6155 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| || ||||| | ||| ||||| ||||| |||| |||||| ||||| || ||| Sbjct 6156 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 6215 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||||||||| || || |||||||| ||||| ||||| | || || Sbjct 6216 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGACTCAACA 6275 Query 82764 TCCAAAGTTATCGTCTTGCCT 82784 ||||| || ||||| || ||| Sbjct 6276 TCCAAGGTGATCGTTTTTCCT 6296 >seq147 Length=23875 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || |||| |||||| ||||||||||| |||||||||||| || | || | || |||| Sbjct 23195 ACCAAGTTCAGAGTGGATTCTTTCTGGATATTATAATCATTTAAAGTTTTTCCACATTCT 23254 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||||||||| ||||| |||| |||||||| || | || ||| |||||||||| ||| Sbjct 23255 AATTGTTTTCCTGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGA 23314 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || |||||||| | ||||||||| ||||| | ||| || || | | || || || Sbjct 23315 ATTTTTGCTTTAATATTTTCAATAGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTT 23374 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | || || ||||||||||| |||||| || Sbjct 23375 CCCCTTAATGTTTTTACAAATATTTGCATTTTT 23407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981776566864475