Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq698 91.5 3e-13 >seq698 Length=7480 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA--------- 81696 |||| |||| ||||| || |||||||| |||| ||||| | ||||| || Sbjct 5432 AGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTTCC 5491 Query 81697 --CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 |||| |||| |||||| ||| | || ||||| |||||||||||||||| || || || Sbjct 5492 TGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTT 5551 Query 81755 TATATTTTCAATCGTAT 81771 || ||| ||||| |||| Sbjct 5552 TACATTCTCAATGGTAT 5568 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA--------- 81696 |||| |||| |||||||| |||||||| |||| ||||| | ||||| || Sbjct 5663 AGTAGATTCTTTCTGTATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTTCC 5722 Query 81697 --CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 |||| |||| |||||| ||| |||| | ||| |||||||||||||||| || || || Sbjct 5723 TGCAAATATTAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTT 5782 Query 81755 TATATTTTCAATCGTAT 81771 | ||| ||||| |||| Sbjct 5783 AACATTCTCAATGGTAT 5799 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/137 (73%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA--------- 81696 |||| |||| ||||| || |||||||| |||| ||||| | || || || Sbjct 5894 AGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCCTCCAATTGCTTTCC 5953 Query 81697 --CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 |||| |||| |||||| ||| | || ||||| |||||||||||||||| || || || Sbjct 5954 TGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTT 6013 Query 81755 TATATTTTCAATCGTAT 81771 || ||| ||||| |||| Sbjct 6014 TACATTCTCAATGGTAT 6030 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/136 (73%), Gaps = 11/136 (8%) Strand=Plus/Plus Query 81647 GTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA---------- 81696 ||| ||||||| || || |||||||| ||| ||||| | ||||| || Sbjct 6126 GTAGATTCCTTTTGGATGTTATAATCCAATAATGTTCTTCCATCTTCCAATTGCTTTCCT 6185 Query 81697 -CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTT 81755 |||| |||| |||||| ||| | || ||||| |||||||||||||||| || || ||| Sbjct 6186 GCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTTT 6245 Query 81756 ATATTTTCAATCGTAT 81771 | ||| ||||| |||| Sbjct 6246 ACATTCTCAATGGTAT 6261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903365747124000