Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq698 111 4e-19 >seq698 Length=7480 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| | |||||||| || ||||| | || || ||| || || Sbjct 5626 CAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCGGAT 5567 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| || |||||||| || |||||||| || || ||| Sbjct 5566 ACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAGCAA 5507 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || |||||||| |||||||||||||| || || | ||||| ||| || Sbjct 5506 AGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAACATC 5447 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 |||||||| |||||| | ||| | || || Sbjct 5446 CAGAAAGAATCTACTTTACACTTAGTCTT 5418 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| | |||||||| || ||||| | || || ||| || || Sbjct 5857 CAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCGGAT 5798 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || |||||||| || ||||||||| || || ||| Sbjct 5797 ACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAGCAA 5738 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || |||||||| |||||||||||||| || || | ||||| ||| | Sbjct 5737 AGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAACATA 5678 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 |||||||| |||||| | ||| | || || Sbjct 5677 CAGAAAGAATCTACTTTACACTTAGTCTT 5649 Score = 93.3 bits (102), Expect = 1e-13 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 206196 AGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAA 206255 ||||||||||||||| ||||| || || || || || | || |||||| || Sbjct 6296 AGGAAAAACGATCACCTTGGATGTTGAGTCATCGGATACCATTGAGAATGTAAAGGCGAA 6237 Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 |||||||| || |||||||| || || |||||| | || || || |||||||| Sbjct 6236 AATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAGCA 6177 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 |||||||||||||| || || ||||| ||| |||| || || ||||| Sbjct 6176 ATTGGAAGATGGAAGAACATTATTGGATTATAACATCCAAAAGGAATCTAC 6126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181759853132025