Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq698 89.7 5e-13 >seq698 Length=7480 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||| || | ||| | || || |||||||| ||| || || || ||||| ||||| | Sbjct 5864 TCCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGA 5923 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 || |||| | || |||| ||||| || |||||||| || | ||||| || | || Sbjct 5924 TAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGG 5983 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | ||||| || ||| ||| || || | | | | | || || ||||| | Sbjct 5984 TATTCCTTCCTTATCT-TGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAA 6042 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | || | |||||| || || || ||||| |||||||||||||||||||||| Sbjct 6043 CATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATTC 6093 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||| || | ||| | || || || ||||| ||| || || || ||||| ||||| | Sbjct 5633 TCCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGA 5692 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 || |||| | || |||| ||||| || |||||||| || | ||||| || | || Sbjct 5693 TAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGG 5752 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 || | ||||| || ||| ||| || || | | | | | || || ||||| | Sbjct 5753 AATTCCTTCCTTATCT-TGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAA 5811 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | || | ||||| || || || ||||| |||||||||||||||||||||| Sbjct 5812 CATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATTC 5862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450770919447000