Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq698 104 2e-17 >seq698 Length=7480 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | ||| || || | ||||| || ||||| || || ||||| || || | Sbjct 5403 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 5462 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | || || |||||||| || || | ||||||||||| || Sbjct 5463 AATGTTCTTCCA-TCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGG 5521 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||| ||||| || ||||||||||| || || || | || || || ||||| || Sbjct 5522 TATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAAC 5581 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| || || || || ||||| || || || |||||| Sbjct 5582 ATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 5630 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||||||||| | ||| || || | |||| || ||||| || || ||||| || || | Sbjct 5864 TCCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGA 5923 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || | | | | || || | || || |||||||| || || | ||||||||||| | Sbjct 5924 TAATGTTCTTCCA-TCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTG 5982 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 |||| ||||| || ||||||||||| || || || | || || || ||||| | Sbjct 5983 GTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAA 6042 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | ||||| || ||||| || || || || ||||| || || || |||||| Sbjct 6043 CATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 6092 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||||||||| | ||| || || | ||||| || ||||| || || ||||| || || | Sbjct 5633 TCCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGA 5692 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || | | | | || || | || || |||||||| || || | |||||||| || | Sbjct 5693 TAATGTTCTTCCA-TCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTG 5751 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||||||||| || || || | || || || ||||| | Sbjct 5752 GAATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAA 5811 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | ||||| || ||||| || || || || ||||| || || || |||||| Sbjct 5812 CATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 5861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505372972143000