Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq700 453 2e-122 seq1322 277 2e-69 >seq700 Length=13977 Score = 453 bits (502), Expect = 2e-122 Identities = 1063/1577 (67%), Gaps = 43/1577 (3%) Strand=Plus/Plus Query 68693 CTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAA 68752 || |||| | ||| ||||| || | ||||| ||| | ||||| | | ||||| Sbjct 4034 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4093 Query 68753 TATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAG 68812 |||| || || || ||||| | ||||||||| ||||| | || || | ||| ||||||| Sbjct 4094 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4153 Query 68813 TTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTA 68872 | ||||||||||| | | ||| |||||| | |||||| || | ||||| ||||| | Sbjct 4154 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4213 Query 68873 GATGTTTCCAATCCCAAAGATCAGATGGTACAAC------ATTCCAAAGATCGTATTGTA 68926 | | |||||| |||| | | | | |||| |||||| | ||| |||| | Sbjct 4214 GTTCAGTCCAATTCCAATATTTA--TTAT-CAACCTTTATATTCCACATATCAAATTGAA 4270 Query 68927 GAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTA 68986 |||| || | || || || | ||| | |||||| || | || ||||| Sbjct 4271 GAATACCTTGGCTAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTGAGCTA 4330 Query 68987 GTTC-ACA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 69044 ||| | | || | ||||||||| | ||||| || ||||| ||||| | ||||| | Sbjct 4331 ATTCCATAGACATT--TCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAA 4388 Query 69045 ATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCC 69104 |||| |||||| ||| | ||||| |||||| ||||||| ||| || ||||| Sbjct 4389 TTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAATCC 4448 Query 69105 CTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGG 69164 || || ||||| || || ||||||||||| | ||||| |||||||||||| || ||| Sbjct 4449 TTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACAGG 4508 Query 69165 ATAATAATTAATATCTATAATTTTATTAAGATTTC--GGACTACTACTTTAACCACGTCC 69222 ||||||||| | ||||||||||| | | ||||| | | || | |||| | || Sbjct 4509 ATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAAT--TTTAGTAATTTCA 4566 Query 69223 TTTAGTTTGAGAAAATCAAA---TCGTCCATCTATA---ACAAACATATTCAGTGCTACA 69276 | || ||| ||||| ||| | | ||| || ||||| || | || | | Sbjct 4567 TATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATA 4626 Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336 ||||||| |||||||| || || |||| | || ||||| ||||| || |||| Sbjct 4627 GATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACAT 4686 Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396 |||||||||||||| || ||||| | ||||| |||||| || ||||| | || Sbjct 4687 AGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCT 4746 Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACG 69456 || || | ||| | || ||| ||||| || ||| || | ||||| ||| | Sbjct 4747 TTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATA-- 4804 Query 69457 ACCCTAGCATTTATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTATATAGC 69513 | || || | || || || || | | || |||| |||||||| | ||||| Sbjct 4805 AATCTTGCGCTAAT-ACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAAT 4863 Query 69514 CGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAAT 69573 ||| ||||| || ||||| ||| || || |||||||||||||||||||| ||| Sbjct 4864 TTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAAT 4923 Query 69574 GACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA 69633 | ||| | || || ||||||| ||||||||| | ||| || | ||||| ||| | Sbjct 4924 GTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAA 4983 Query 69634 AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCC 69693 || | |||||| | || |||||| || || ||||||| | | ||| |||||||| Sbjct 4984 AATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCA 5043 Query 69694 ATAATATCAGAATGCCATGGTTCTAGATATATCGC-CATGACTCCCGGTCGTTTATTTCC 69752 | ||||| |||||||||||||| | ||||| || |||| ||| || ||| ||| Sbjct 5044 AATATATCTGAATGCCATGGTTCAATATATACTGCAAATGA-TCCTTTTCTTTTTCCTCC 5102 Query 69753 TCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG-AATAATACCAT 69811 || ||||||| ||||| || || | ||| | ||||| | ||| || | |||| || | Sbjct 5103 ACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGT 5161 Query 69812 TAGATTTACCATTTGTTC--CAGAAATATAACTTCCTCTTGCGCGAATAT-TACTAATAG 69868 | ||| |||||||||||| | | |||| | || | | | || |||| | || | | Sbjct 5162 TTGATATACCATTTGTTCCTCTTATATATGAATT--TTGTCCACGTATATCTTGTACT-G 5218 Query 69869 ATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928 || ||| || || ||||| ||||| || | |||||| | || ||||| ||| | | Sbjct 5219 CTACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAA 5278 Query 69929 TACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTA 69988 | || || || ||| || |||| || | |||||| ||||| || || | | Sbjct 5279 TTCCTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTG-TGGTCT- 5336 Query 69989 TAGT-TCCC-GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAG 70046 | || |||| | |||||||||||| || | ||| || || || |||||| || | ||| Sbjct 5337 TGGTGTCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAG 5396 Query 70047 ATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCAT 70106 || |||||||| | ||| ||||| ||| ||| || || || | || | ||| Sbjct 5397 ATGATATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCAT 5456 Query 70107 CAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTC 70166 | || ||| || |||| ||||| |||||||||| || ||| | ||||| |||| Sbjct 5457 TATCAAATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTC 5516 Query 70167 CAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226 | |||||||| |||||||| | || ||| || | | ||| ||| | ||| Sbjct 5517 TAACGTTTTAAAACCAAAATAATCATAATTAAAATCACGTGTATAATCAATCTCTTTATT 5576 Query 70227 TAGTTTATCCTTATATT 70243 || | ||||||||| || Sbjct 5577 TAATCTATCCTTATGTT 5593 >seq1322 Length=3124 Score = 277 bits (306), Expect = 2e-69 Identities = 609/903 (67%), Gaps = 26/903 (3%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| || ||| || || ||| |||| ||||| || ||||| || ||||| |||| Sbjct 2948 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 2889 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 | || || ||||| ||| ||| ||||| |||||| | | ||||| | | || Sbjct 2888 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACC 2829 Query 39433 TAA---TTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489 ||| ||| ||| |||| |||||| ||||||||||| || ||| | | | Sbjct 2828 TAAACATTCC--AAT-AATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGA 2772 Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549 |||||| || || | | | ||||||| || || || | |||| | || || Sbjct 2771 ATTCATCCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTTTCAACTTCAAC 2712 Query 39550 GGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGC---AATAAATGTTT 39606 || ||| | | || | | || || || || | || |||||| | Sbjct 2711 AGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---T 2655 Query 39607 AAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGA 39666 | | ||||| || || || ||||| || |||||||||||||||| ||| ||| Sbjct 2654 ATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACT 2595 Query 39667 AAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC 39726 ||| || |||||| | | | | | ||||| | |||||| || ||| |||| || Sbjct 2594 AAAAGTAAGTCCATGTAATTTATTCTGTTTTTTAAACCAAAAAATTGCACAAAAACTACC 2535 Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA---ACTTGT 39783 | ||| | || ||||| || |||| ||| |||| ||| ||| | | | |||| Sbjct 2534 ACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTGT 2475 Query 39784 ATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 |||||| |||||| || |||||| ||||| ||||| || || || |||| Sbjct 2474 ATCATT---TATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTC 2418 Query 39844 TATAGCATTAAAGAGAT---AATGTTTTTCATCACTATCTTTAACATATGTATCTATTAA 39900 ||||||| ||| | || || ||| || |||| ||||| | ||| |||| || | Sbjct 2417 AATAGCATGAAATAAATTTAAACGTTCTTTATCA---TCTTTTATATAATTATCAATAAG 2361 Query 39901 CAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCT 39960 | ||| ||| |||||||||| |||||||| | || || |||||| |||||| | | Sbjct 2360 TAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTT 2301 Query 39961 TGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC-GCCAAATTTTCATTCACTATTC 40019 ||||| |||||||| || ||| |||| ||| | ||||||||||| ||||| | Sbjct 2300 AGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTATAC 2242 Query 40020 CATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA 40079 |||||||||| ||||||||||| || |||||||||||||||| |||||||| | | Sbjct 2241 CATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTA 2182 Query 40080 ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 |||| | | || || | ||| |||||| ||||| |||||||||||||||||| || | Sbjct 2181 ATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATG 2122 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATC 40199 | ||||| ||||| || | | ||| | ||| | ||| |||||| | | ||||| Sbjct 2121 CTTCTGCTTTTTTATAAAAATCCCAAACATCTGGGTATAAAATTGGATACAATGTAAATC 2062 Query 40200 TAT 40202 ||| Sbjct 2061 TAT 2059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686874239901000