Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1322 212 5e-50 seq325 176 4e-39 seq148 156 3e-33 >seq1322 Length=3124 Score = 212 bits (234), Expect = 5e-50 Identities = 586/881 (67%), Gaps = 33/881 (4%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||| ||||||| ||| | || | ||| | | || ||||||||| | || ||||||| Sbjct 2071 TGTATCCAATTTTATACCCAGATGTTTGGGATTTTTATAAAAAAGCAGAAGCATCATTTT 2130 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA---TTAAAAC 43823 ||||||| |||||| | ||||| | | || ||| | ||| ||| | ||||| Sbjct 2131 GGACAGCTGAAGAAATAGATTTATCAAGTGATTTAAAAGATT---TTGAAAAATTAAATG 2187 Query 43824 CACAAGAAAAACATTTTAT--ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGAT 43881 | | |||||||||||||| | | | ||||| || |||||||| || || || || || Sbjct 2188 AAAATGAAAAACATTTTATTAAACAT--GTTTTAGCATTTTTTGCAGCTAGTGATGGTAT 2245 Query 43882 AGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATG 43941 ||| |||||||||| |||| |||| |||||||||| | ||||||| | Sbjct 2246 AGTATTAGAAAATTTGGCTAGTAAGTTTTTAAGAGAAGTTCAAATTACAGAAGCTAAAAA 2305 Query 43942 TTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT 44001 ||||| |||||||| || ||||||| || ||||| |||| ||||||| | || || Sbjct 2306 ATTTTACTCATTTCAAATAGCAGTAGAAAACATACATTCAGAAACGTACAGTTTACTTAT 2365 Query 44002 AGATACGTACATCAAAGATGGGCACGAGAAGCATCGA-TTGTTTAATGCGATAGAAACAG 44060 |||| || || ||||||| | || | | | | || ||| |||| || |||| Sbjct 2366 TGATAATTATATAAAAGATGATAAAGA-ACGTTTAAATTTATTTCATGCTATTGAAAATA 2424 Query 44061 TACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTT 44120 |||| || |||| |||||||| ||||| |||||||||||| | |||| | Sbjct 2425 TACCAGCAGTTAAGAATAAAGCACTTTGGGCTGCAAAATGGATAAATGATACAAATTCAT 2484 Query 44121 TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTG 44180 ||| |||| || |||| || |||| ||| ||||| || | ||| || | |||| Sbjct 2485 TTGCAGAAAGAATTGTAGCAAATGCATGTGTTGAAGGTATACTATTTAGTGG-TAGTTTT 2543 Query 44181 CG-GCCATATTTTGGTTAAAGAAACGAGGTTTGA-TGCCTGGGTTGACGTTTTCAAATGA 44238 | || || |||||||| || |||| || | | | | ||| | || ||| ||||| Sbjct 2544 TGTGCAATTTTTTGGTTTAAAAAAC-AGAATAAATTACATGGACTTACTTTTAGTAATGA 2602 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCT 44298 |||| ||| | |||||||| |||||| |||||| ||| || || | | | | Sbjct 2603 ACTAATTAGTAGAGATGAAGGATTACATACAGATTTTAATTGTTTAATATATAG---TTT 2659 Query 44299 AGGAGACGATAAGCCTTCATGTAAGA--CAATTACAGATATTGTTGTAGAGGCAGTAAAG 44356 | ||| |||| || |||| ||| | |||||||| ||| || || | Sbjct 2660 ATTAGAAAATAA--ATTACCAGAAGAAGTTGTTAAAAATATTGTTAAAGAAGCTGTTGAA 2717 Query 44357 ATAGAACAAGAATT--TATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAAC 44414 | ||| | || |||| | | | ||||| ||||||| || |||||| | Sbjct 2718 GTTGAAAGATCTTTCATATGTGA--ATCTCTACCTTGTGATTTAATTGGGATGAATTCAA 2775 Query 44415 TTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA---CTGGGTT 44471 || ||| || ||||| |||| | |||||||| ||| |||||| | |||| Sbjct 2776 GATTAATGTCTCAGTATATAGAATTTGTAGCAGATCGATTA---TTGGAATGTTTAGGTT 2832 Query 44472 GCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAG 44531 | ||| | | || | |||| || ||| ||| ||||| ||||| | ||| Sbjct 2833 GTTCAAAAATTTTTTATGCAAAAAATCCTTTTAATTGGATGGATTTAATTTCTCTACAAG 2892 Query 44532 GCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 | ||||||||||||||||||||||| |||| || |||||| Sbjct 2893 GAAAAACAAACTTTTTTGAAAAACGTGTTGCTGATTATCAG 2933 >seq325 Length=61907 Score = 176 bits (194), Expect = 4e-39 Identities = 379/561 (68%), Gaps = 23/561 (4%) Strand=Plus/Plus Query 19319 TTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTG 19378 ||||||| | || |||||||||| |||||| | || ||||| || || ||| | Sbjct 16568 TTAAACAGCTAGGTATTAAACATGTTAAGGGACTTATACTGTATGGCCCTCCAGGTACAG 16627 Query 19379 GAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAA 19435 ||||||||||||| || ||| | | ||||| ||| | ||| | |||| |||| Sbjct 16628 GAAAAACATTAATCGCAAGACAGATAGGTAAAACATTAAATGCAAGAGAACCA---AAAA 16684 Query 19436 TTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGAC 19495 || | || ||||| ||||| ||||||||||||||||| || || ||||||||| | ||| Sbjct 16685 TTATTAACGGTCCAGAAATATTAAATAAATATGTAGGACAGTCAGAAGAAAATATTCGAA 16744 Query 19496 GTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT---TTGC 19552 ||| ||| || |||||| |||| | |||| || | | |||| |||| || | Sbjct 16745 ATTTATTTAAAGATGCTGAAATAGAATATAAAC--AAAGTGGGGAAAA-TTCTTTATTAC 16801 Query 19553 ACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG---------TTCTG 19603 | ||||| |||||||| ||| | || || || |||| |||||||| ||| Sbjct 16802 ATATTATTATACTAGACGAAATTGATGCTATATGTAGACAAAGAGGAAATTCCTCTTCCA 16861 Query 19604 GTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTA 19663 || | ||||||| |||| | | | || ||||| | || || ||| | || || || | Sbjct 16862 GTAGTACTGGAGTAAATGATAGTATAGTGAATCAGTTACTTTCCAAAATTGATGGAGTGA 16921 Query 19664 ACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCG 19723 | | |||||||| | |||| || ||||| ||||| | || | || || | Sbjct 16922 ATAGTTTAAATAATATACTTCTTATAGGTATGACAAATAGGATAGATCTTATTGATGAAG 16981 Query 19724 CCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACT-TACCCGATGAATGT 19782 | || ||| |||| || |||| ||| || | || |||| || || | || || | Sbjct 16982 CATTGTTAAGACCTGGAAGGTTTGAATTACATATAGAAA-TATCTCTTCCAAATAAGGAA 17040 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAAT 19842 ||| | | |||| ||||| ||||||||| || ||| || ||| ||| |||| | Sbjct 17041 GGAAGAATTCAAATATTAAATATACATACAAAAAATATGAGAAAAAGTAATAAATTAAGT 17100 Query 19843 GACGATGTAGATCTAGAAGAA 19863 ||||| || |||||||| Sbjct 17101 CCAGATGTTAATATAGAAGAA 17121 >seq148 Length=40499 Score = 156 bits (172), Expect = 3e-33 Identities = 284/416 (68%), Gaps = 0/416 (0%) Strand=Plus/Minus Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 ||||| || | | |||| | ||||| ||||||| ||||| | | ||||||||||||| Sbjct 34352 GATAGAGAAGTAAATGATTTAGGTCCAATTTATGGTTTTCAATGGAGACATTTTGGAGCT 34293 Query 40914 AAATATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTT 40973 ||||| | |||||| | ||||| ||||||||||| |||||| || | || Sbjct 34292 GAATATACAAATATGTATGATAATTATGATAATAAAGGAATTGATCAACTAAAAAATATT 34233 Query 40974 ATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCA 41033 ||| || ||| ||| || || || || | || || ||||| || |||||| | Sbjct 34232 ATAAATTTGATAAAAAATGAACCATTAAGTAGAAGAATTATTTTGTGTGCATGGAACGTA 34173 Query 41034 ACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC 41093 | ||| | || |||||||| |||||||||||| | ||||| || ||||| ||| | Sbjct 34172 AAGGATTTGGATAAAATGGCATTACCACCTTGTCATATTTTATGCCAATTTTATATTTTC 34113 Query 41094 AATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 |||| || | |||||| |||||||| |||| |||| | || || || || || Sbjct 34112 GATGGGAAATTATCATGTATCATGTATCAACGATCTTGTGATTTAGGGCTTGGTGTTCCC 34053 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213 || || || || ||| | | |||| || ||| |||| || || || ||| || Sbjct 34052 TTCAATATTGCCTCTTACTCAATTTTCACCTACATGCTTGCTCAAGTATGTAACTTACAA 33993 Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGA 41269 |||| ||||| | ||| |||||| ||| || || || | ||||| ||||| Sbjct 33992 CCTGCAGAATTCATACACGTTTTAGGAAATGCTCACATATATAACAATCATATAGA 33937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397436502920125