Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq700 159 4e-34 >seq700 Length=13977 Score = 159 bits (176), Expect = 4e-34 Identities = 594/928 (64%), Gaps = 5/928 (1%) Strand=Plus/Minus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATT-CCAATGCTTCGCGTATTTAACGCCACAGC 104571 || ||||||||| |||| | || |||| | |||||| | | || ||||||| ||||| Sbjct 5180 GGAACAAATGGTATATCAAACGG-ATTAGTACCAATGTTAAGAGTTTTTAACGATACAGC 5122 Query 104572 GCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCC 104628 | |||||| |||||| ||| | |||| ||||| | ||||| ||| |||| || Sbjct 5121 TAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGATCATTTGCAGTATATATTGAACC 5062 Query 104629 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGC 104688 |||||| | ||||| | ||||| || || ||| | || || ||| | || || Sbjct 5061 ATGGCATTCAGATATATTTGAGTTTCTAGATTTGAGAAAAAATCATGGTAAAGAAGAATT 5002 Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 || | ||| | || | ||| | ||| | |||||| | || ||||| |||||| | Sbjct 5001 ACGAGCTAGAGATTTATTTTATGCTGTTTGGGTACCAGATTTGTTTATGAAAAGAGTTAA 4942 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808 || | | |||||| | | | |||||| | | || ||| | || | Sbjct 4941 AGAAAATAAAAATTGGACATTAATGTGTCCAAATGAATGTCCAGGTTTAAGTGAAACATG 4882 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC 104868 |||||| || |||||| | || ||| || || |||||| | | | || Sbjct 4881 GGGTGAAGAATTTGAAAAATTATATGAAAAATATGAAGAAGAAAATTTAGGAAAAAAAAC 4822 Query 104869 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 || ||| ||| | ||| |||||| | | ||||| || || ||| ||| Sbjct 4821 TGTATTAGCGCAAGATTTATGGTTTGCTATTTTACAAAGTCAAATAGAAACAGGTGTACC 4762 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 ||| ||| | || ||||| | ||||| || ||||||||| ||||| || || Sbjct 4761 ATATATGTTGTATAAAGATTCATGTAATGCTAAATCTAATCAAAAAAATTTAGGGACAAT 4702 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 || || ||||| ||| ||||| | |||| |||| |||||| ||||| Sbjct 4701 TAAATGTAGTAATCTATGTTGTGAAATAATCGAATATACATCACCAGATGAAGTTGCTGT 4642 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 105108 |||||| | ||||| || ||| | || | ||| ||| |||| | ||| | ||| | Sbjct 4641 TTGTAACTTAGCATCTATTGCTTTATGTAAATTTGTAGATACAGAAAAAAAAATGTTTAA 4582 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 || | ||||| | | ||| |||| |||| | | || | ||| || ||| | |||| || Sbjct 4581 TTTTAAAAAATTATATGAAATTACTAAAATTATTACGAGAAATTTAGACAAAATTATAGA 4522 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 ||||||| ||| || ||| | ||| | ||| || | ||||| | ||||| || Sbjct 4521 AAGAAATTATTATCCTGTTAAAGAAGCTGAAAGATCAAACAGAAGACATAGACCAATAGG 4462 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 105288 | ||||| || || | || ||| ||| || |||| | | | | || || || Sbjct 4461 AATTGGTGTACAAGGATTAGCTGATACATTTATGCTTTTAAGATATCCTTACGAATCAGA 4402 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 ||||| || ||| | ||| | || ||||| || |||||| | || || | || Sbjct 4401 TGAAGCAAAAGAATTAAATAAAAGAATTTTTGAAACTATGTATTATGCTGCATTAGAAAT 4342 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 | | || || || | || |||| ||||||| | | ||| ||| ||||||| Sbjct 4341 GTCTATGGAATTAGCTCAAATTTATGGGAAATATGAATCTTATGAAGGTAGTCCAGCTAG 4282 Query 105409 ACAAGGGGTGCTTCAATTTGATATGTGG 105436 ||||| | |||||||||||||||||| Sbjct 4281 CCAAGGTATTCTTCAATTTGATATGTGG 4254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583231454691000