Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq708 123 1e-23 >seq708 Length=34717 Score = 123 bits (136), Expect = 1e-23 Identities = 333/503 (66%), Gaps = 15/503 (3%) Strand=Plus/Minus Query 64892 CCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAG 64951 ||||| || ||||| | | |||||||| || || | || |||| ||| |||| | Sbjct 32177 CCTGTACCTATACCTTCACATCCATTTATCAATATTGTAGGTATAACTGGGATATAATAT 32118 Query 64952 ATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCATCATCCTCTTTT 65011 || || | | | || || |||| ||||| ||||| || | |||||| | || Sbjct 32117 TGTGGTTCTATTTTTTGTCCTTCCTCATTTAAATATTTCAATATAGGATCATCATATTCA 32058 Query 65012 GGAAATATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCT---TTCGGATGCG 65068 ||||||| | ||| || |||| ||| | |||||||| | | || || Sbjct 32057 TTAAATATACTTCTTGTTGAGCTAGCTAATTTTGTAAATATATATCTCGCTGCAGAAGCA 31998 Query 65069 TGGTCTTGTCCAG-TTCGT--CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATA 65125 | ||| |||| ||| | | ||||||| || ||| |||| ||| || |||||| Sbjct 31997 T---CTTTTCCACCTTCTTTTCTACTTCCAAATTGTCCACATGGCTCTAAAAAGTTAATA 31941 Query 65126 TTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCA 65185 ||||| ||||| | ||| | || ||||| |||||||| | | || | | ||| Sbjct 31940 TTGTTAGAACCTACAAATGTTTGTGCCATATTGATAATTGTTTGTTGTAGAGATGATTCT 31881 Query 65186 CCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCC 65245 || ||||||||| | ||| |||| | || ||| |||||||||||||| ||| Sbjct 31880 CCATGATGATATGCACTATGCTCAGCAATGTAACCAACTAATTGAGCAACTTTACATTCA 31821 Query 65246 GTTGTTAAA-TTCTTTTTAA--ATGCAGAATACAATATTTTCCGTAAACTAATTTTCAAT 65302 || ||||| ||| ||| || || || | | | | || || || | | |||| || Sbjct 31820 TTTTTTAAATTTCGTTTGAAACATCCATATAAAACTTTTCTCTGT---CCAGGTTTCCAT 31764 Query 65303 CCATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTATGAATTCT 65362 |||||||||| ||| ||||| ||||| || ||||||| | || | | ||| |||||| Sbjct 31763 CCATCCATTATATTTGGAATACTTCTTTCTGTATCATATCTAGAATAGTATATTAATTCT 31704 Query 65363 TTGTTAATAAATTCTTCATATGA 65385 || || | ||| || | ||| || Sbjct 31703 TTATTTACAAAATCGTAATAAGA 31681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235668438791250