Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2752 109 5e-19 >seq2752 Length=4442 Score = 109 bits (120), Expect = 5e-19 Identities = 195/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| || || || || || ||||||| |||||| || || |||| ||| |||||||| Sbjct 3266 TTTCCACTTCTCACCACAAAGCGTGTGTTCTGGAAAGGGGTCCTCGAAGAGTTGCTGTGG 3325 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | | || | ||||||| | || | || || ||| ||||||||||||||| Sbjct 3326 TTCATTCGCGGCGACACGAACGCAAACCATCTTTCTGAGAAGGGCGTGAAGATCTGGGAC 3385 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 | | | | || || || || || ||| |||| || |||| || ||| Sbjct 3386 AAGAATGTGACACGCGAGTTCCTCGATTCGCGCAATCTCCCCCACCGAGAGGTCGGAGAC 3445 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 | ||||||| |||||| ||||||||||||||||| || |||| || | | | Sbjct 3446 ATCGGCCCGGGCTACGGCTTCCAGTGGAGACACTTCGGCGCGGCATACAAAGACATGCAC 3505 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATC 34504 | ||||| | || ||||| | ||||||||| || | |||||| Sbjct 3506 ACAGACTACACAGGGCAGGGCGTCGACCAGCTGAAGAATGTGATC 3550 Score = 109 bits (120), Expect = 5e-19 Identities = 195/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6841 GATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATA 6900 |||||| | || ||||||||| | ||||| || | ||||| | | | | || Sbjct 3550 GATCACATTCTTCAGCTGGTCGACGCCCTGCCCTGTGTAGTCTGTGTGCATGTCTTTGTA 3491 Query 6901 CTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCG 6960 |||| || ||||||||||||||||| |||||| ||||||| | ||| || |||| || Sbjct 3490 TGCCGCGCCGAAGTGTCTCCACTGGAAGCCGTAGCCCGGGCCGATGTCTCCGACCTCTCG 3431 Query 6961 AGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC 7020 |||| ||| || || || || || | | | | ||||||||||||||| Sbjct 3430 GTGGGGGAGATTGCGCGAATCGAGGAACTCGCGTGTCACATTCTTGTCCCAGATCTTCAC 3371 Query 7021 CCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTC 7080 ||| || || | || | ||||||| | || | | ||||||||||| ||| || Sbjct 3370 GCCCTTCTCAGAAAGATGGTTTGCGTTCGTGTCGCCGCGAATGAACCACAGCAACTCTTC 3311 Query 7081 GACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 || || || |||||| ||||||| || || || || || ||||| Sbjct 3310 GAGGACCCCTTTCCAGAACACACGCTTTGTGGTGAGAAGTGGAAA 3266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448239846798000