Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq698 131 4e-25 >seq698 Length=7480 Score = 131 bits (144), Expect = 4e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 || || ||| | ||| | ||| || ||||| |||||||||||||| | | || ||||| Sbjct 5414 TCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCC 5473 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||||| ||||| || || | | ||| || || || || | ||||||||| Sbjct 5474 ATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTT 5533 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || || || || || ||||| || || |||||| ||||| ||||| Sbjct 5534 ATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGAT 5593 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| || | || || ||||| | ||||||| Sbjct 5594 GGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 5630 Score = 131 bits (144), Expect = 4e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 || || ||| | ||| | ||| || ||||| || ||||||||||| | | || ||||| Sbjct 5645 TCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGATAATGTTCTTCC 5704 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||||| ||||| || || | | ||| || || || |||| ||||||||| Sbjct 5705 ATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGAATTCCTTCCTT 5764 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || || || || || ||||| || || |||||| ||||| ||||| Sbjct 5765 ATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGAT 5824 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| || | || || ||||| | ||||||| Sbjct 5825 GGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 5861 Score = 122 bits (134), Expect = 2e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 || || ||| | || | ||| || ||||| |||||||||||||| | | || ||||| Sbjct 5876 TCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCC 5935 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| ||||| ||||| || || | | ||| || || || || | ||||||||| Sbjct 5936 ATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTT 5995 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || || || || || ||||| || || |||||| ||||| ||||| Sbjct 5996 ATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGCGTGAT 6055 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| || | || || ||||| | ||||||| Sbjct 6056 GGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 6092 Score = 95.1 bits (104), Expect = 3e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || |||||||||||||||||| | || ||||||||||||| ||||| ||| Sbjct 6126 GTAGATTCCTTTTGGATGTTATAATCCAATAATGTTCTTCCATCTTCCAATTGCTTTCCT 6185 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | | ||| || || || || | ||||||||| || || || || || Sbjct 6186 GCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTTT 6245 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 || || || ||||| || || ||||| || | |||||||| ||||| Sbjct 6246 ACATTCTCAATGGTATCCGATGACTCAACATCCAAGGTGATCGTTTTTCC 6295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159092222169125