Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq698 147 1e-30 >seq698 Length=7480 Score = 147 bits (162), Expect = 1e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||| | || ||||| || ||||| ||||| ||||| || | Sbjct 5861 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 5802 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| || |||| ||| |||| | |||| || || || ||||| | || ||||||| Sbjct 5801 GGATACCATTGAGAATGTTAAGGCGAAAA-TTCAAGATAAGGAAGGAATTCCACCAGATC 5743 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | ||||||||||| || || ||| ||||||| | | | || ||| ||||| | Sbjct 5742 AGCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATA 5683 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||| ||||| || || ||||| ||||| ||| | || |||||||| Sbjct 5682 ACATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGA 5633 Score = 138 bits (152), Expect = 8e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||| | || ||||| || ||||| ||||| ||||| || | Sbjct 6092 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATC 6033 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||| | |||| |||||| || || ||||| |||| || ||||| Sbjct 6032 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 5973 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | ||||||||||| || || ||| |||| || | | | || ||| ||||| || Sbjct 5972 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATAA 5913 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| || || ||||||||||| ||| | || |||||||| Sbjct 5912 CATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGGA 5864 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||| | || ||||| || ||||| ||||| ||||| || | Sbjct 5630 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 5571 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||| | |||| |||||| || || ||||| |||| || ||||| Sbjct 5570 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 5511 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | ||||||||||| || || ||| ||||||| | | | || ||| ||||| || Sbjct 5510 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 5451 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||| || || ||||| ||||| ||| | || ||||||| Sbjct 5450 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 5403 Score = 120 bits (132), Expect = 2e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAA 23697 |||||||||||||| | || ||||| || |||| || |||| | |||| ||| Sbjct 6295 GGAAAAACGATCACCTTGGATGTTGAGTCATCGGATACCATTGAGAATGTAAAGGCGAAA 6236 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 ||| || || ||||| |||| || ||||| || | ||||||||||| || || ||| Sbjct 6235 ATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAGCAA 6176 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTA 23817 ||||||| | | | || ||| ||||| ||||| ||||| || || || ||||||||| Sbjct 6175 TTGGAAGATGGAAGAACATTATTGGATTATAACATCCAAAAGGAATCTACCTTACATTTA 6116 Query 23818 GTTTTAAGGTTGCGAGGAGGA 23838 || ||| | || |||||||| Sbjct 6115 GTCTTACGATTAAGAGGAGGA 6095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337993019044700