Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq98 113 1e-19 seq147 95.1 3e-14 >seq98 Length=24937 Score = 113 bits (124), Expect = 1e-19 Identities = 77/87 (89%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || |||||||||||||||| ||| | |||||||||||||||||||| |||||||||||| Sbjct 19008 GCACCATACACAGGTTGTGCTATGGCGGAATATTTTAGAGATAATGGGAAACATGCTTTA 19067 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || || | |||||||||||||||||| Sbjct 19068 ATAATTTTTGATGATTTAAGTAAACAA 19094 >seq147 Length=23875 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 225514 AGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTC 225573 |||||||||||||| |||| ||| ||||| |||||| | ||| ||||| || || Sbjct 23204 AGAGTGGATTCTTTCTGGATATTATAATCATTTAAAGTTTTTCCACATTCTAATTGTTTT 23263 Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || || | || ||||| |||| | ||||| ||||||| || || || |||||| Sbjct 23264 CCTGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAAT-TTTTGC 23322 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || | | ||| || || ||| | ||| || || | | || || || ||| | || Sbjct 23323 TTTAATATTTTCAATAGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAA 23382 Query 225693 AGTTTTTATGAACACTTGCATTTT 225716 ||||||| || | ||||||||| Sbjct 23383 TGTTTTTACAAATATTTGCATTTT 23406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192469700793350