Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1322 232 6e-56 >seq1322 Length=3124 Score = 232 bits (256), Expect = 6e-56 Identities = 583/873 (67%), Gaps = 21/873 (2%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||||||| |||| || || || | || || ||||| || || || ||||| |||| || Sbjct 2945 AACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAG 2886 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 ||||| ||||| ||| ||| ||||| |||| | || |||| ||| || Sbjct 2885 AGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACCTAA 2826 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | | ||||| || |||||||||||||||||||| ||| | | | || || Sbjct 2825 ACATTCCAATAATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGAATTCAT 2766 Query 4427 TCCAATTAATCTCACA-GGTAGCGCGT---ATGTCAAAAACTCTTGTTCTATAGTTACGG 4482 |||||||| ||||| ||||| | | || | ||| | |||| || | || | Sbjct 2765 CCCAATTAAA-TCACAAGGTAGAGATTCACATATGAAAGA-TCTT--TCAACTTCAACAG 2710 Query 4483 CTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACA 4542 ||||| | | |||| ||| | |||| | | ||||||| |||| | | | | | Sbjct 2709 CTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAACTATATA 2650 Query 4543 ATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACG 4602 |||||| |||||| ||| || ||||| ||||| ||||| ||||| ||| ||| | Sbjct 2649 TTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAAAG 2590 Query 4603 TTAATCCGGGCA-TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 | | ||| | | || | || | ||||||| |||||| || || ||| ||| | Sbjct 2589 TAAGTCCATGTAATTTATTCTGT-TTTTTAAACCAAAAAATTGCACAAAAACTACCACTA 2531 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 || | ||| ||||| || ||| ||||| | || | || || | | | Sbjct 2530 AATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTG---TA 2474 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATA 4781 || || ||||||||| ||||| ||||| |||||||| || || | | ||| Sbjct 2473 TCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATA 2414 Query 4782 GCGTTAAATAATTT---ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGG 4838 || | |||||| || || || || | |||| |||||| | || || |||| Sbjct 2413 GCATGAAATAAATTTAAACGTTCTTTATCA---TCTTTTATATAATTATCAATAAGTAAA 2357 Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 || ||| |||| |||||||| ||||||| || || |||||| |||||| | ||||| Sbjct 2356 CTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTTAGCT 2297 Query 4899 TCTGTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCGTC 4957 ||||| | ||||||||| | |||| ||| ||| | || ||||| ||||||||| || Sbjct 2296 TCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTATACCATC 2238 Query 4958 ACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTT 5017 ||| ||||||||||| || |||||||| ||||| | | ||| | || | ||| Sbjct 2237 ACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTT 2178 Query 5018 TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTC 5077 || | | ||||| | | |||||| | ||||||| | |||||||| || ||||| Sbjct 2177 TTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTC 2118 Query 5078 CGCTTTTTTGTACATAGACCAAATATCAGGATA 5110 |||||||| || | | ||||| ||| || || Sbjct 2117 TGCTTTTTTATAAAAATCCCAAACATCTGGGTA 2085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427028651215325