Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq700 473 2e-128 seq1322 242 5e-59 >seq700 Length=13977 Score = 473 bits (524), Expect = 2e-128 Identities = 1026/1517 (68%), Gaps = 35/1517 (2%) Strand=Plus/Plus Query 77101 CTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAA 77160 || |||| | ||||||||| || | ||||||||| | |||||| | | ||||| Sbjct 4034 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4093 Query 77161 TATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAG 77220 |||| || || || ||||| | ||||||||||||||| || || || | |||||| |||| Sbjct 4094 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4153 Query 77221 TTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTA 77280 | ||||||||||| | | ||| |||||| | |||||| || | ||||| ||||| | Sbjct 4154 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4213 Query 77281 GATATTTCCAATCCCAAAGATCTGAAGGTACAAC------ATCCCAAAGATCGTATTGTA 77334 | | |||||| |||| || | | |||| || ||| | ||| |||| | Sbjct 4214 GTTCAGTCCAATTCCAAT-ATTT--ATTATCAACCTTTATATTCCACATATCAAATTGAA 4270 Query 77335 GAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTA 77394 |||| || | ||||| || | ||| | |||||| || | ||| ||||| Sbjct 4271 GAATACCTTGGCTAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTGAGCTA 4330 Query 77395 GTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT 77454 ||| | | ||| ||||| | ||||| || ||||| ||||| | ||||| | | Sbjct 4331 ATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATT 4390 Query 77455 CTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCT 77514 ||| ||||||| || | ||||| |||||| ||||| | ||| |||||||| | Sbjct 4391 CTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAATCCTT 4450 Query 77515 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGAT 77574 | || ||||| || || ||||||||||| | || || ||| ||||||| || ||||| Sbjct 4451 GTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACAGGAT 4510 Query 77575 AATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTA 77634 ||||||| | ||||||||||| | | |||||| || | |||| | || | || Sbjct 4511 AATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCATATA 4570 Query 77635 GTTTAAGAAAATCAAA---TCTTCCATCTATAACAA-ACATGTTCA--AAGCTATAGATG 77688 ||| ||||| ||| | || ||| || | | | || | || |||| ||||||| Sbjct 4571 ATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATAGATG 4630 Query 77689 CTAGATTACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACATAGA 77747 ||| |||||||| || || |||| | | | || ||||| ||||| || ||||||| Sbjct 4631 CTAAGTTACAAACAGCAACTTCATCTGGTGATGT-ATATTCGATTATTTCACAACATAGA 4689 Query 77748 TTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTA 77807 ||||||||||| || || || | ||||| ||| || || ||| ||||| || ||| Sbjct 4690 TTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTTA 4749 Query 77808 TAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT 77867 || | ||| | || || ||||| || || || | ||||| ||| | | | Sbjct 4750 TACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATA--AAT 4807 Query 77868 CTAGCTTTTATCATAGATTTGTATCGCC---TCTCTCTTTCATATTGAGTATATAGCCGT 77924 || || | || | || ||| | || | ||| |||||||| ||||| | Sbjct 4808 CTTGCGCTAAT-ACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAATTTT 4866 Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| || ||||| ||| || || || ||||||||||| ||||| |||| | Sbjct 4867 TCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATGTC 4926 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || | || ||| ||||||| ||||||||| | ||| |||| ||| | |||| |||| Sbjct 4927 CAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAAAAT 4986 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 | ||||| | || |||||| || || ||| ||| | | ||| |||||||| | Sbjct 4987 AAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCAAAT 5046 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 ||||| |||||||||||||| | ||||| ||| | ||| || ||| || || Sbjct 5047 ATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACCT 5106 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTAGA 78223 ||||||| |||||| || || | ||| ||||||| |||||||| | |||| ||||| || Sbjct 5107 TGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTTGA 5165 Query 78224 TGTTCCATTTGTTC--CAGAAATATAACTTCCACTTG--CGCGAATAT-TACTAATGGAT 78278 | | |||||||||| | | |||| | || ||| | || |||| | || | | | Sbjct 5166 TATACCATTTGTTCCTCTTATATATGAATT----TTGTCCACGTATATCTTGTACT-GCT 5220 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || ||||| | ||| ||| | ||| || | || ||||| || | || Sbjct 5221 ACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATT 5280 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 78398 || || || || | |||| || | |||||| ||||| || | Sbjct 5281 CCTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGT 5340 Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || |||| |||||||||||| || | |||||| ||||| |||||| || | |||| Sbjct 5341 GTCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGA 5400 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||| | ||| ||||| || | ||| || || | | ||| | ||| | | Sbjct 5401 TATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATC 5460 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 | ||| || |||||||| | | |||||||| || ||| || ||||| |||| || Sbjct 5461 AAATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAAC 5520 Query 78579 GTTTTAAAACCAAAATA 78595 ||||||||||||||||| Sbjct 5521 GTTTTAAAACCAAAATA 5537 >seq1322 Length=3124 Score = 242 bits (268), Expect = 5e-59 Identities = 594/883 (67%), Gaps = 38/883 (4%) Strand=Plus/Minus Query 47831 TTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTT 47890 || || |||||| || ||| ||||| ||| | |||||||| || ||||| || ||||| Sbjct 2954 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 2895 Query 47891 GCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAttttttt 47950 |||| | || || ||||| ||| ||| ||||| ||||| | |||||||| Sbjct 2894 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGA 2835 Query 47951 AAATCCTAA---TTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCAT 48007 | | ||||| ||| ||| | || |||||| || ||||||||||| ||| | Sbjct 2834 ACAACCTAAACATTCC--AATAA-TCGATCTGCTACAAATTCTATATACTGAGACATTAA 2778 Query 48008 TTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTC-CGTAAGAAAC-TCTTGTTCG 48065 | ||||||| || || | | | ||||||| || | || |||| |||| || Sbjct 2777 TCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTT--TCA 2720 Query 48066 ATAGTGACAGCATCCACTATTATCGATGTT----ACCGTTTCCTCACTTGGTGGATAC-- 48119 | ||||| || ||| | || || || ||| || | | || Sbjct 2719 ACTTCAACAGCTTCT----TTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTC 2664 Query 48120 -AACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAAT 48178 || ||| || | |||||||| |||||| ||| | ||||||||||||||||| Sbjct 2663 TAATAAAC---TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAAT 2607 Query 48179 TAATTCGTTAGAAAATGTGAGACCGGGCA--TTAGTCCACGTTTTTTGAGCCAAAATATT 48236 || ||| ||| ||| || || || | | ||| || ||||||| | |||||| ||| Sbjct 2606 TAGTTCATTACTAAAAGTAAGTCCATGTAATTTATTCT--GTTTTTTAAACCAAAAAATT 2549 Query 48237 GCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCT 48296 || ||| ||| ||| | ||| ||||| || ||| ||| || ||| ||| Sbjct 2548 GCACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCT 2489 Query 48297 CCGTAACTGGCTTCGTTG--TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACAC 48354 | || || || || | |||||| | |||||| || || ||||| || Sbjct 2488 GC--AAATGAATTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTG 2431 Query 48355 AAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt--ttCATTGCTATCTTTAACGTA 48412 || || |||| ||||||| ||| | || || ||| || |||||| | || Sbjct 2430 CTGGTATATTTTCAATAGCATGAAATA--AATTTAAACGTTCTTTATCATCTTTTATATA 2373 Query 48413 AGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCC 48472 | |||| || | | ||| ||| |||| || || || ||||| | ||| || |||||| Sbjct 2372 ATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGA 2313 Query 48473 GTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC-AGCCAAATTCT 48531 |||||| | | |||||||| || || || || | |||| | | | ||||||||| | Sbjct 2312 GTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTT 2254 Query 48532 CATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTT 48591 | |||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||| Sbjct 2253 CTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTT 2194 Query 48592 CGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 48651 | || | | | ||| | | || || | ||| |||||| ||||| ||||||||||| Sbjct 2193 CATTTTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTG 2134 Query 48652 TCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694 ||||||||||||| |||||||||||||| | || ||| | ||| Sbjct 2133 TCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATC 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694633849476000