Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq698 96.9 8e-15 >seq698 Length=7480 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTC 151964 |||||| ||||| |||||||| ||||| | ||| ||||| |||||||| | ||||| Sbjct 5432 AGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTT-- 5489 Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || || || | || ||||| || | | ||||||||||| ||||||||||| Sbjct 5490 CCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCC 5549 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| |||| | | | || || || || || || || || || || || || | Sbjct 5550 TTTACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTCAAG 5609 Query 152085 GTCTTCACGAAGACCTGCATT 152105 || ||||| || | ||||||| Sbjct 5610 GTTTTCACAAATATCTGCATT 5630 Score = 95.1 bits (104), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| | |||||| ||||| |||||||| ||||| | ||| ||||| ||||| || Sbjct 5882 GACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCCTC 5941 Query 151955 TAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 | ||||| || || || || | || ||||| || | | ||||||||||| ||| Sbjct 5942 CAATTGCTTT--CCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCT 5999 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || ||| |||| | | | || || || || || || || || || Sbjct 6000 TGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGCGTGATGGTC 6059 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | || ||||| || | ||||||| Sbjct 6060 TTTCCTGTCAAGGTTTTCACAAATATCTGCATT 6092 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTC 151964 |||||| ||||| || ||||| ||||| | ||| ||||| |||||||| | ||||| Sbjct 5663 AGTAGATTCTTTCTGTATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTT-- 5720 Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || || || | || ||||| || | | ||||||||||| ||||||||||| Sbjct 5721 CCTGCAAATATTAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTCGCC 5780 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| |||| | | | || || || || || || || || || || || || | Sbjct 5781 TTAACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTCAAG 5840 Query 152085 GTCTTCACGAAGACCTGCATT 152105 || ||||| || | ||||||| Sbjct 5841 GTTTTCACAAATATCTGCATT 5861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153761297100775