Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq698 118 2e-21 >seq698 Length=7480 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 |||||| || |||||| |||||||| || || | | || | |||||||| | ||| Sbjct 5888 ATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCCTCCAATTG 5947 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 || || ||||| || || | ||| || || || || || ||||| ||||| || || Sbjct 5948 CTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTT 6007 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || ||||| | || || || ||||| | ||| || ||||| ||||| ||||| || || Sbjct 6008 CGCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGCGTGATGGTCTTTCCTGT 6067 Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100 ||| || || || |||||||||||| Sbjct 6068 CAAGGTTTTCACAAATATCTGCATT 6092 Score = 111 bits (122), Expect = 3e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| || |||||| |||||||| || || | | || | ||||| || | ||| Sbjct 5427 TGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGC 5486 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| || || | ||| || || || || || ||||| ||||| || || Sbjct 5487 TTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTC 5546 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || ||||| | || || || ||||| | ||| || ||||| ||||| ||||| || ||| Sbjct 5547 GCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTC 5606 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 || || || || |||||||||||| Sbjct 5607 AAGGTTTTCACAAATATCTGCATT 5630 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| || |||||| || ||||| || || | | || | ||||| || | ||| Sbjct 5658 TGTAAAGTAGATTCTTTCTGTATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGC 5717 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| || || | ||| || || ||||| || ||||| ||||| || || Sbjct 5718 TTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTC 5777 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | || || || ||||| | ||| || ||||| ||||| ||||| || ||| Sbjct 5778 GCCTTAACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTC 5837 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 || || || || |||||||||||| Sbjct 5838 AAGGTTTTCACAAATATCTGCATT 5861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046685219332350