Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1322 241 1e-58 seq3911 143 3e-29 seq621 123 3e-23 seq3247 120 3e-22 seq2876 120 3e-22 seq2865 102 8e-17 seq292 84.2 2e-11 seq1861 82.4 8e-11 >seq1322 Length=3124 Score = 241 bits (266), Expect = 1e-58 Identities = 563/837 (67%), Gaps = 27/837 (3%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||||||||| ||| ||||| || |||||||| |||| ||||| ||||| || || | Sbjct 2948 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 2889 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324 || || || ||||| ||| ||| ||||| | || | | | | ||| Sbjct 2888 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACC 2829 Query 23325 TAA---TTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCAT- 23380 ||| |||| ||| | ||||||||||||||| ||||| ||| |||| || || | Sbjct 2828 TAAACATTCCAATAATCG---ATCTGCTACAAATTCTATATACTGAGACATTAA-TCTTG 2773 Query 23381 AGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAA 23440 | || || || |||| | || | | ||| ||| ||| | |||||| || Sbjct 2772 AATTCATCCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTTTCAACTTCAA 2713 Query 23441 CAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAA 23500 |||| ||||||| || | || ||||||||| | || || ||| | || Sbjct 2712 CAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAACTAT 2653 Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560 | | |||||| |||||| ||||| |||||||| |||||||| | ||||||| || Sbjct 2652 ATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAA 2593 Query 23561 ATGTTAATCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG 23619 | || | ||| || ||| || || ||||||||| |||||| |||||| ||| || Sbjct 2592 AAGTAAGTCCATGTAATTTATTCT-GTTTTTTAAACCAAAAAATTGCACAAAAACTACCA 2534 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679 ||| | ||||| |||||| ||| || |||| | | |||||| ||| Sbjct 2533 CTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGA---ATTT 2477 Query 23680 TAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA-ATTGTTTC 23738 |||| ||||||||| | |||| || || | | ||| || || |||| Sbjct 2476 GTATCATTTATCCATTTTGCAGCCCAAAGTGCTTT-ATTCTTAACTGCTGGTATATTTTC 2418 Query 23739 AATTGCTTTTAAGAGAAAAGTTTT----TTCTTCATTATCTGTTATATATGTATCAATTA 23794 ||| || | || | || ||| ||||| || |||| ||||||| ||||||| | Sbjct 2417 AATAGCAT----GAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAA 2362 Query 23795 GTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATC 23854 ||||||| ||| |||| ||||| || ||||| | || || ||||| ||||| | Sbjct 2361 GTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTT 2302 Query 23855 TAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATAC 23914 ||||||| | | |||||| || | ||||| | |||| |||||||| || |||| Sbjct 2301 TAGCTTCTGTAATTTGAACTTCTCTTAAAAACTTACTAGCCAAATTTTCTAATACTATAC 2242 Query 23915 CATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGA-- 23972 |||||||||| ||||| || || | ||||| ||| ||||||||| |||||| || | Sbjct 2241 CATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCAT--TTTCATT 2184 Query 23973 TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 |||||||| |||| || | ||| |||||||||| | ||| ||| |||||||||| Sbjct 2183 TAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAA 2127 >seq3911 Length=3311 Score = 143 bits (158), Expect = 3e-29 Identities = 93/102 (91%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 8400 TCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAG 8459 || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 2989 TCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG 3048 Query 8460 GCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAG 8501 || ||||||||||| ||||||||||||||||||||||| Sbjct 3049 GCGTGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAG 3090 >seq621 Length=18858 Score = 123 bits (136), Expect = 3e-23 Identities = 91/109 (83%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 8486 TTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTG 8545 ||| | ||||||||||||| ||||||||||||||| |||||| ||||||||| |||||| Sbjct 18752 TTTTTCTTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTG 18811 Query 8546 ACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAG 8594 |||||| ||||| || | | |||| ||||||||||||| |||||| Sbjct 18812 ACCTCA--TGATCTGCCYRCYTYRGCCTSCCAAAGTGCTGGGTTTACAG 18858 >seq3247 Length=4385 Score = 120 bits (132), Expect = 3e-22 Identities = 83/93 (89%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 8413 TTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA 8472 ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 4291 TTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGTGTGCCACCA 4350 Query 8473 CGCCAAGCTAA-TTTTTGTATTTTTAGTAGAGA 8504 ||| |||||| ||||||||||||||||||||| Sbjct 4351 TGCCCAGCTAATTTTTTGTATTTTTAGTAGAGA 4383 >seq2876 Length=8122 Score = 120 bits (132), Expect = 3e-22 Identities = 88/102 (86%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 8355 TGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTT 8414 |||||| ||||||||||||| |||||| |||||||||||| | ||||||||||| Sbjct 8024 TGCCCA---TGGAGTGCAGTGGTGCAATCTCCAGTCACTGCAACCTACACCTCCCGGGTT 8080 Query 8415 CAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTA 8456 ||||| ||||||||||||||| |||| ||||||||||||||| Sbjct 8081 CAAGCGATTCTCCTGCCTCAGGCTCCCGAGTAGCTGGGATTA 8122 >seq2865 Length=1560 Score = 102 bits (112), Expect = 8e-17 Identities = 92/116 (79%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 ||||||| || ||||||| ||||| | |||| |||||| |||||| ||| ||||||| Sbjct 329 TCACTCTTGTCGCCCAGGGTGGAGGACGATGGCG-GATCTCGGCTCACCGCACCCTCCGC 271 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCC-TCCAGAGTAGCTGGGATTACAG 8459 ||||| |||||| ||||| ||| |||||| ||| ||||||||| ||| |||| Sbjct 270 CTCCCAGGTTCAWRKGATTCTSCTGYYTCAGCCTTCCCGAGTAGCTGSGATGACAG 215 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/119 (80%), Gaps = 6/119 (5%) Strand=Plus/Minus Query 8507 GGGTTTC-ACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCC----AC 8561 ||| ||| | ||||||| ||| |||||||||||||||||| ||||| | |||| | Sbjct 849 GGGATTCTATCATGTTGCCCACGCTGGTCTCGAACTCCTGTCCTCAAGCAATCCGCCTGC 790 Query 8562 CTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGC-CCTT 8619 ||||||||||| |||| | ||||| ||||||||| |||| | | ||||||||| |||| Sbjct 789 CTGCCTCGGCCGCCCACACTGCTGCTATTACAGGCGTGAGACGCTGCGCCTGGCTCCTT 731 >seq292 Length=6120 Score = 84.2 bits (92), Expect = 2e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 8421 ATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGC 8480 |||||||||||||||||||| |||||||||||| ||||||| |||||||| || ||| Sbjct 6118 ATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCGTGCCACCACACCCAGC 6059 Query 8481 TAATT-TTTGTATTTTTAGTA 8500 ||||| || |||| ||| || Sbjct 6058 TAATTATTACTATTATTACTA 6038 >seq1861 Length=3478 Score = 82.4 bits (90), Expect = 8e-11 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 8566 CTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGC 8615 ||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 1 CTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGC 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521461762635000