Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq698 129 1e-24 >seq698 Length=7480 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | |||||||| || ||||||||||| || ||| || || Sbjct 5626 CAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCGGAT 5567 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || || ||||| || || |||||||| || || || |||||| Sbjct 5566 ACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAGCAA 5507 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| || | ||||||||||| || | | ||||||||| || Sbjct 5506 AGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAACATC 5447 Query 178104 CAAAAAGAATCAAC 178117 || |||||||| || Sbjct 5446 CAGAAAGAATCTAC 5433 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | |||||||| || ||||||||||| || ||| || || Sbjct 5857 CAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCGGAT 5798 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || || ||||| || || |||||||| || || || |||||| Sbjct 5797 ACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAGCAA 5738 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| || | ||||||||||| || | | ||||||||| | Sbjct 5737 AGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAACATA 5678 Query 178104 CAAAAAGAATCAAC 178117 || |||||||| || Sbjct 5677 CAGAAAGAATCTAC 5664 Score = 109 bits (120), Expect = 1e-18 Identities = 129/173 (75%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 |||||||||||||||| | || || || || || ||||| ||||| || || || Sbjct 6296 AGGAAAAACGATCACCTTGGATGTTGAGTCATCGGATACCATTGAGAATGTAAAGGCGAA 6237 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 ||||| || || |||||||| || || || |||||| || | || || || ||||| || Sbjct 6236 AATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAGCA 6177 Query 178067 GCTCGAAGATGGAAGGAC--TCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117 | ||||||||||| || | ||| ||||||||| ||||||| ||||| || Sbjct 6176 ATTGGAAGATGGAAGAACATTATTG--GATTATAACATCCAAAAGGAATCTAC 6126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203669123205850