Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq598 141 1e-28 >seq598 Length=26426 Score = 141 bits (156), Expect = 1e-28 Identities = 585/903 (65%), Gaps = 25/903 (3%) Strand=Plus/Plus Query 16663 AACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAG 16722 |||||| | | || ||||| ||| |||||||| |||||||| ||||| || | ||| Sbjct 2475 AACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAG 2534 Query 16723 AGATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAG 16782 ||| || ||||| ||| ||||||||| | || |||| ||||| || | || | Sbjct 2535 AGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACCTAA 2594 Query 16783 TTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCAT 16842 | | ||||| ||| ||||||||||||||||| || |||||||| | ||||| Sbjct 2595 ACATTCCAATAATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGAATTCAT 2654 Query 16843 TCCTATAAGACGTACCGGAAGAGCTTC---CGTCAAAAATCGTTGCTCTATAACAACCGC 16899 || || | | || |||| ||| | ||| ||| | || | |||| || Sbjct 2655 CCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTT---TCAACTTCAACAGC 2711 Query 16900 TTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTT-TAAGATGTTTAAACA 16958 ||| |||| |||| | ||| ||| || | | ||| || ||| | || | | Sbjct 2712 TTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATA-AACTATATA 2770 Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 | | ||| ||||| ||||||||| || ||||| || || ||||| ||| ||| | Sbjct 2771 TTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAAAG 2830 Query 17019 TCA-ACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 | | || | || | | || |||| || |||||||| || || || ||| | Sbjct 2831 TAAGTCCATGTAATTTATTCT-GTTTTTTAAACCAAAAAATTGCACAAAAACTACCACTA 2889 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 || | |||||| || || ||||| || | | || ||| || | | | | | Sbjct 2890 AATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA---TGAATTTGTA 2946 Query 17138 TTACGAATCCATTTCTGCA-CCCACTCGGCTTTTTGCTTTA-TGCAATCCATCGTTTCTA 17195 | | |||||||| |||| |||| ||||| | ||| | ||| || |||| | Sbjct 2947 TCATTTATCCATTT-TGCAGCCCAAAGTGCTTTATTCTTAACTGC-TGGTATATTTTCAA 3004 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 | || | |||||| || ||| | || ||||||| |||| || |||| | Sbjct 3005 TAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAAGTAAAC 3064 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||||| |||| || |||||||| || | ||||| |||||| |||||| | |||| Sbjct 3065 TGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTTAGCTT 3124 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTC-CGCTAGATTTTCGTTCACGATGCCGTCG 17374 | | |||||||||| | | || || | | | || | |||||| || || || || Sbjct 3125 CTGTAATTTGAACTT-CTCTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCA 3183 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTC-GTCCGGTGTAAGAAC 17433 || || || ||||| || || | ||| ||||| |||| |||||| | | ||| Sbjct 3184 CTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTT 3243 Query 17434 GCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCAC 17493 | | || |||||||| | |||| ||| | |||||| | |||||||| || | Sbjct 3244 TC-AAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTC 3302 Query 17494 TGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAA--CATATCTA 17551 ||| |||||||| | || ||||| ||| |||| || || |||||| | ||||| Sbjct 3303 TGCTTTTTTATAAAAATCCCAAACATCTGGGTATAAAATTGG--ATACAATGTAAATCTA 3360 Query 17552 TCT 17554 ||| Sbjct 3361 TCT 3363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517531192824360