Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq598 179 4e-40 >seq598 Length=26426 Score = 179 bits (198), Expect = 4e-40 Identities = 595/906 (66%), Gaps = 31/906 (3%) Strand=Plus/Plus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 |||||| | | || |||||| ||| |||||||| || ||||| |||||||| | || Sbjct 2475 AACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAG 2534 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAG 16020 ||| || ||||| ||| ||| ||||| | || |||| || || || | || | Sbjct 2535 AGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACCTAA 2594 Query 16021 ---TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATT 16077 |||| | ||||| ||||||||||||||||||||| ||| ||||||| |||| Sbjct 2595 ACATTCC---AATAATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGAATT 2651 Query 16078 AATTCCTAT-AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCG 16136 || || || || || | || |||| || || || | ||| | |||| | Sbjct 2652 CATCCCAATTAAATCACAA-GGTAGAGATTCACATATGAAAGATCTTTCAACTTCAACAG 2710 Query 16137 CTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACA 16196 ||||||||| |||| | | | ||| | | ||| | || || | | Sbjct 2711 CTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAACTATATA 2770 Query 16197 TTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAG 16256 ||| ||| || || ||||| |||||| ||||| || || ||||| || ||||| Sbjct 2771 TTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAAAG 2830 Query 16257 TTAACCC-TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA 16315 | | || || |||| | || |||| || ||||| || || ||| ||| || | Sbjct 2831 TAAGTCCATGTAATTTATTCT-GTTTTTTAAACCAAAAAATTGCACAAAAACTACCACTA 2889 Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375 || | |||||| |||||| ||||| || | | || ||| || | | | | | || Sbjct 2890 AATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAA---TTTGTA 2946 Query 16376 TTACGAATCCATTTCTGTA-CCCATTCGGCTTTTTGTTTTATACAATCC----ATCGTTT 16430 | | |||||||| || | |||| ||||| | | ||| | | | || ||| Sbjct 2947 TCATTTATCCATTT-TGCAGCCCAAAGTGCTTTAT-TCTTA---ACTGCTGGTATATTTT 3001 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | || || | ||| || || ||| | | ||| ||||||| ||||||| |||| Sbjct 3002 CAATAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAAGTA 3061 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 |||||||| ||||||| |||||||| |||| ||||| |||||| || || | || Sbjct 3062 AACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTTAG 3121 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTC-CGCCAGGTTCTCATTCACGATACCG 16609 | || | ||||| |||| | | ||||| | | | |||| || || || ||||| Sbjct 3122 CTTCTGTAATTTGAACTT-CTCTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCA 3180 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTC-GTCAGATGTAAG 16668 ||||| || |||||||| || || | || ||||| |||| |||||| | || ||| Sbjct 3181 TCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTAA- 3239 Query 16669 AATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGC 16728 | | ||||||||||||| | |||| ||| | |||||| | |||||||| || Sbjct 3240 TTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGC 3299 Query 16729 CACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGT--AT 16786 |||| |||||||| | | ||||| ||| |||| || || |||| | || || Sbjct 3300 TTCTGCTTTTTTATAAAAATCCCAAACATCTGGGTATAAAATTGG--ATACAATGTAAAT 3357 Query 16787 CTATCT 16792 |||||| Sbjct 3358 CTATCT 3363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511400163501640