Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq139 95.1 1e-14 >seq139 Length=46061 Score = 95.1 bits (104), Expect = 1e-14 Identities = 279/422 (66%), Gaps = 16/422 (4%) Strand=Plus/Minus Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCA 18857 || || ||||| || || || ||||||||||||||||| ||||||| | | | | || | Sbjct 37367 GGTCCAATTTATGGTTTTCAATGGAGACATTTTGGAGCTGAATATACA-AATATGTATGA 37309 Query 18858 -AACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAA 18916 || ||| | ||||||| ||||| || ||| | ||||| || || |||| | Sbjct 37308 TAATTATGATAATAAAGGAATTGATCAACTAAAAAATATTATAAATTTGATAAAAAATGA 37249 Query 18917 CCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGT 18976 ||| ||| || |||| ||| | | | ||||| ||||||| | ||||| Sbjct 37248 ACCATTAAGTAGAAGAATTATTTTGTGTGCATGGAACGTAAAGGATTTGGATAAAATGGC 37189 Query 18977 ACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTG--C 19034 | |||| || ||||| | ||||| || ||||| || | || ||||||| || Sbjct 37188 ATTACCACCTTGTCATATTTTATGCCAATTTTATATTTTCGATGGGAAATTATCATGTAT 37129 Query 19035 CAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATAT 19094 || |||| || |||| | ||| | || ||||| || || ||||| ||||| || Sbjct 37128 CATGTAT--CAACGATCTTGTGATTTAGGGCTTGGTGTTCCCTTCAATATTGCCTCTTAC 37071 Query 19095 GCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC-GGAGATTTAATTCA 19153 || || | |||||||| | || || | || ||||| |||| | || |||||| Sbjct 37070 TCAATTTTCACCTACATGCTTGCTCAAG-TATGTAACTTACAACCTGCAG----AATTCA 37016 Query 19154 TACA----ATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGC 19209 |||| | || |||| || || || |||||||||||| | ||||| | || | Sbjct 37015 TACACGTTTTAGGAAATGCTCACATATATAACAATCATATAGATAGTCTAAAAATTCAAC 36956 Query 19210 TA 19211 || Sbjct 36955 TA 36954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399493156837215