Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq546 356 3e-93 seq598 206 3e-48 seq1515 170 2e-37 >seq546 Length=57643 Score = 356 bits (394), Expect = 3e-93 Identities = 1029/1573 (65%), Gaps = 35/1573 (2%) Strand=Plus/Plus Query 53127 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 53186 || |||| | ||| ||||| || || ||||||||| | |||||| | | ||||| Sbjct 4544 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4603 Query 53187 TATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 53246 |||| || || |||||||| | ||| ||||| ||||| || || || | ||| ||||||| Sbjct 4604 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4663 Query 53247 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 53306 | ||||||||||| | | ||| |||||| | || | | || | ||||| ||||| | Sbjct 4664 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4723 Query 53307 GAGGTTC---CCAATTCCAAAG------ATCCGACGGTACAACNNNNNNNNNNNNNNNTT 53357 | ||| |||||||||| ||| | || | || Sbjct 4724 G---TTCAGTCCAATTCCAATATTTATTATCAACCTTTATA---TTCCACATATCAAATT 4777 Query 53358 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 53416 | |||||||| | || || | || | ||| |||| | || ||| || | | | | Sbjct 4778 GAAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTGA 4836 Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 53476 |||| ||| | | ||||||||| | ||||| || ||||| || || | |||||| Sbjct 4837 GCTAATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTT 4896 Query 53477 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 53536 | |||| |||||| || | ||||| |||| || ||||| | || |||||| Sbjct 4897 AATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAAT 4956 Query 53537 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 53596 ||||| |||||||| || || ||||||||||| | || || ||||||||||| || | Sbjct 4957 CCTTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACA 5016 Query 53597 GGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCC 53656 ||||||||||| | ||||||||||| | | ||||| ||| | ||| | || Sbjct 5017 GGATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCA 5076 Query 53657 TTCAGTTTGAGAAAATCAAA-----TTGTCCATCTAT-TACAAACATGTTCAATGCAATA 53710 | | ||| ||||| ||| || | | ||| |||||| | || |||||| Sbjct 5077 TATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATA 5136 Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 53770 ||||| | |||||||| || || |||| | | ||||| ||||| ||| || Sbjct 5137 GATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACAT 5196 Query 53771 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 53830 ||||||||||| || || || |||||||||| ||||||| || ||||| | ||| Sbjct 5197 AGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCT 5256 Query 53831 TTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACG 53890 ||||| | || |||| ||| ||||| || || || || ||| || ||| | Sbjct 5257 TTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAA 5316 Query 53891 ACACGAGCCTTTATTATAGATTTGTATCTC---TTTTCTCTTTCGTATAGTGTATACAAT 53947 | | || || || || ||| | || |||||| ||| ||| | ||| ||| Sbjct 5317 TCTTGCGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAAT 5373 Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 54007 |||||| || || ||||| | || || |||||||||| |||||||| || Sbjct 5374 TTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAAT 5433 Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 | ||| | | | || || |||| ||||||||| | ||| || | ||||| ||| | Sbjct 5434 GTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAA 5493 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 |||| |||||| | || ||| || || || ||| ||| | | ||| || ||| | Sbjct 5494 AATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCA 5553 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATA-TGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | ||||| |||||||| ||||| | |||| || || | ||| | ||| ||| Sbjct 5554 AATATATCTGAATGCCATGGTTCAATATATACTGCAAATGA-TCCTTTTCTTTTTCCTCC 5612 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCAT 54245 || ||||||| |||||||| || | ||| ||||||| |||||||| | |||| || | Sbjct 5613 ACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGT 5671 Query 54246 TGGATGCACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGAT 54304 | ||| |||||| || || ||||| | | | |||| |||| | || | Sbjct 5672 TTGATATACCATTTGTTCCTCTTATATATGAATTTTGTC-CACGTATATCTTGTACTGCT 5730 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || ||||| ||||| || || || ||| | ||||| || ||| | || Sbjct 5731 ACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATT 5790 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 || || || ||| | |||| |||| |||||| ||||| || | | Sbjct 5791 CCTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGT 5850 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || | ||||||||| || || | || || ||||| |||||| || | |||| Sbjct 5851 GTCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGA 5910 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || || | ||| |||| ||| | ||| || || | || || | ||||| | Sbjct 5911 TATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATC 5970 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 | || || |||||||| | || || || || || || || || || |||| || Sbjct 5971 AAATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAAC 6030 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGT 54664 ||||||||||||||||| | || ||| || ||| ||| ||| || || | | Sbjct 6031 GTTTTAAAACCAAAATAATCATAATTAAAATCACGTGTATAATCAATCTCTTTATTTAAT 6090 Query 54665 TTATCCTTATATT 54677 ||||||||| || Sbjct 6091 CTATCCTTATGTT 6103 >seq598 Length=26426 Score = 206 bits (228), Expect = 3e-48 Identities = 395/575 (69%), Gaps = 8/575 (1%) Strand=Plus/Plus Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA--TTAGGC 24207 |||| || || ||||||||||||| ||| || ||| || ||||| | | ||| | Sbjct 2791 TGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCATGTAATTTATTC 2850 Query 24208 CACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACT 24266 | ||||||| |||||| || | | |||| | ||| ||| | || ||||| || Sbjct 2851 T--GTTTTTTAAACCAAAAAATTG-CACAAAAACTACCACTAAATAGTATACCTTCAACA 2907 Query 24267 GCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCC 24326 ||| || | || ||||||| || | | |||| |||||| ||| |||| Sbjct 2908 CATGCATTTGCTACAATTCTTTCTGCAAATGAATTTGTATCATTTATCCATTTTGCAGCC 2967 Query 24327 CAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttt 24386 ||| || || || || || || || | || ||||||| ||| | || | Sbjct 2968 CAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGT 3027 Query 24387 tCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 24446 || ||| |||||| | ||| ||||||| | | ||| ||| |||| ||||| |||||| Sbjct 3028 TCTTTATCATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTT 3087 Query 24447 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAA 24506 || | || ||||||||| ||| || | |||| || ||||| || |||||| | || Sbjct 3088 TCTACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCTTAAA 3147 Query 24507 AATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 24565 || | | || || |||||||| ||||| || ||||| ||||||||||| || || || Sbjct 3148 AA-CTTACTAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAAC 3206 Query 24566 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 24625 |||||| ||||||| |||||| | | ||| ||| | |||| || | ||| | || Sbjct 3207 ATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTTAAATCACTTGA 3266 Query 24626 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 || ||| | |||||| |||||||||||||||| ||||| |||||||| | || ||| | Sbjct 3267 TAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAAC 3326 Query 24686 GTCATGATATTGAATTGGAAAAATAACAAATCTAT 24720 || | ||| ||||||| | | |||||||| Sbjct 3327 ATCTGGGTATAAAATTGGATACAATGTAAATCTAT 3361 >seq1515 Length=1449 Score = 170 bits (188), Expect = 2e-37 Identities = 228/312 (73%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 ||| |||| ||| ||||||| || | |||||| |||| || || || ||||||| || Sbjct 594 ATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGC 535 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 |||||||| || || | |||| || | || ||||| ||| | ||||| | | Sbjct 534 TATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAATT-TAC 476 Query 24515 T-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 24573 | || |||||||| |||||||| ||||| ||||||||||| || || |||||||||| Sbjct 475 TAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTA 416 Query 24574 TAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATATCC 24632 |||||| |||||| | | ||| ||| ||| || || || | ||| | |||| ||| Sbjct 415 TAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCT 357 Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 | |||||| | ||||||||||| || || || |||||||| | |||||| | ||| || Sbjct 356 ATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGA 297 Query 24693 TATTGAATTGGA 24704 ||| ||| ||| Sbjct 296 TATATAATAGGA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593705072274960