Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq139 250 4e-61 seq546 172 8e-38 seq380 134 2e-26 >seq139 Length=46061 Score = 250 bits (276), Expect = 4e-61 Identities = 510/750 (68%), Gaps = 11/750 (1%) Strand=Plus/Plus Query 205336 GGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTAACATAT 205395 ||||| |||| || | | | || ||| |||||| | || |||||||| |||| Sbjct 36931 GGAAAAGGGTAGGGAATTCTGTTTAGTTGAATTTTTAGACTATCTATATGATTGTTATAT 36990 Query 205396 ATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGTGCA 205455 || || ||||| || | | || || ||||| |||| ||| ||| || || ||| Sbjct 36991 ATGTGAGCATTTCCTAAAACGTGTATGAATTCTGCAGGTTGTAAGTTACATACTTGAGCA 37050 Query 205456 ATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATATCA 205515 | ||| || || || | ||| |||| ||| || || ||||| | || | |||| Sbjct 37051 AGCATGTAGGTGAAAATTGAGTAAGAGGCAATATTGAAGGGAACACCAAGCCCTAAATCA 37110 Query 205516 GCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAATTGTACA 205575 |||| ||||||||| ||||| | |||| || | | || |||||| Sbjct 37111 CAAGATCGTTGATACATGATACATGATA---ATTTCCCATCGAAAATATAAAATTGGCAT 37167 Query 205576 AAACAATGACAAGGTGGTATAACCATATTTTCAACAT-CTATAGGATTCCAGGCTGTTAA 205634 ||| |||||||||||||| |||| || || | || || || | ||||| || || Sbjct 37168 AAAATATGACAAGGTGGTAATGCCATTTTATCCAAATCCTTTACG-TTCCATGCACACAA 37226 Query 205635 TATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAATTGATC 205694 || || ||||| | |||| ||||||||| ||||||||||| | ||| |||||| Sbjct 37227 AATAATTCTTCTACTTAATGGTTCATTTTTTATCAAATTTATAATATTTTTTAGTTGATC 37286 Query 205695 AAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCA 205754 || ||||| ||| |||||| || ||||| |||||| ||| |||||||| | ||| Sbjct 37287 AATTCCTTTATTATCATAATTATCATACATATTTGTATATTCAGCTCCAAAATGTCTCCA 37346 Query 205755 TTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttt 205814 |||||||||||||| ||||||||||||| | ||| ||||||| ||| | || | Sbjct 37347 TTGAAAACCATAAATTGGACCTAAATCATTTACTTCTCTATCAAATAAATTTCTATTATC 37406 Query 205815 tatatattttaatgatccattttcatcccaaatatggattcctttattttttaGAATATT 205874 || | ||| | | ||||||| | ||||| || | ||||||| | |||||| Sbjct 37407 TAAAAATTCTCTAGTTCCATTTGCTTCCCATATTCTCACATTTTTATTTAACAAAATATT 37466 Query 205875 TGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACAT 205934 | ||| ||| || ||||||||| | ||||||||||| ||||||||| ||| | Sbjct 37467 TCCATTTGTTTCCCCTCTTATAAACCAAAGTAATTCTTCAATAATTCCTCTTATAAATAA 37526 Query 205935 TGATTTTGTTGTAAATAATGGAAATGAATCATCTAATTTATATTTCATAGTTAAACCATA 205994 | || ||||| |||| ||||| | ||| |||| ||||| ||||| | | ||| | Sbjct 37527 TTTCTTGGTTGTTAATAGGGGAAAATATTCAGCTAAATTATACTTCATCATATATCCAAA 37586 Query 205995 TACAGTTTTTGTATCTACACCTGTTCTAT--TTTTGGTTATTCTTCCATTAGATAAT-AT 206051 | | || | | | || |||||||||| | || |||| ||||||| || || | Sbjct 37587 TTTACTTAATACACCAACTCCTGTTCTATCATCCTGTTTAT--TTCCATT-TATCATAAC 37643 Query 206052 TTCTGATATACCTTTTAAATATTGATATTC 206081 || ||||| |||||||||||||| || Sbjct 37644 ATCGTATATAATATTTAAATATTGATACTC 37673 >seq546 Length=57643 Score = 172 bits (190), Expect = 8e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | || || | ||||| || || || || | || ||||| || Sbjct 56454 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATC 56395 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| ||||||||||||||| ||||| |||||||| ||||| Sbjct 56394 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 56335 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | || ||||||||||| ||||| |||||| | |||||||| ||||||||| Sbjct 56334 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATAA 56275 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || |||||||| ||||| ||||| || ||||| ||| |||| || Sbjct 56274 CATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGG 56227 Score = 167 bits (184), Expect = 4e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | || || | ||||| || || || || | || ||||| || Sbjct 55992 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 55933 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| ||||||||||||||| ||||| |||||||| ||||| Sbjct 55932 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 55873 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | || ||||||||||| ||||| || ||| | |||||||| ||||||||| Sbjct 55872 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 55813 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 || || |||||||| ||||| || || || ||||| ||| |||| ||| || || Sbjct 55812 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGTTTTTAA 55758 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | || || | ||||| || || || || | || ||||| || Sbjct 56223 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 56164 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || ||||||||||||||| ||||| || ||||| ||||| Sbjct 56163 GGATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCA 56104 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | || ||||||||||| ||||| || ||| | |||||||| ||||||||| Sbjct 56103 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 56044 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || |||||||| ||||| || || || ||||| ||| |||| || Sbjct 56043 CATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 55996 Score = 150 bits (166), Expect = 3e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 124565 AGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGAA 124624 ||| ||||| || || | || |||| || ||||| ||| ||| |||| ||| Sbjct 56658 AGGAAAAACGATCACCTTGGATGTTGAGTCATCGGATACCATTGAGAATGTAAAGGCGAA 56599 Query 124625 AATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACA 124684 |||||||||||| ||||| |||||||| ||||| ||||| | || ||||||||||| || Sbjct 56598 AATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAGCA 56539 Query 124685 ATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTT 124744 ||| || ||| | |||||||| ||||||||| || ||||| ||||| ||||| ||||| Sbjct 56538 ATTGGAAGATGGAAGAACATTATTAGATTATAACATCCAAAAGGAATCTACTTTACATTT 56479 Query 124745 GGTTTTACGTTTACGAGGTGG 124765 || ||||| ||| |||| || Sbjct 56478 AGTCTTACGATTAAGAGGAGG 56458 >seq380 Length=37146 Score = 134 bits (148), Expect = 2e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| |||| ||| ||| || ||||| || | | ||| ||||| || Sbjct 27203 AATGCAAATATTTGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATCAGT 27262 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| ||| ||||| || |||||||| ||||| |||| || || | || Sbjct 27263 AGATACTATTGAAAATATTAAAGCA-AAAATTCAGGATAAGGAAGTAATTCCCCTCGACG 27321 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | ||||||||||||||||||||||| | | ||| ||| | ||||||| Sbjct 27322 AACAAAGATTAATTTTTGCAGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATTATA 27381 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||| || |||||||| ||| || | ||||| Sbjct 27382 ATATCCAGAAAGAATCCACTCTGAACTTGGT 27412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755434969993600