Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq546 96.9 3e-15 >seq546 Length=57643 Score = 96.9 bits (106), Expect = 3e-15 Identities = 174/250 (70%), Gaps = 6/250 (2%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| | ||||| || || ||||| | ||||| ||||| || ||||| ||||| | Sbjct 55764 ACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATC--T 55821 Query 118571 CATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 ||| || | | ||| || | || ||||| || | || | | ||||||||||| Sbjct 55822 GATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGT 55881 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTC 118687 ||||| || ||||| ||| |||||| || || | || | ||| |||| || | || Sbjct 55882 GGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGAT-TC 55940 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTC 118747 || |||| ||| | || || || |||| ||||| ||||| |||||||| || | | Sbjct 55941 AACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATTCCTCCTCC 56000 Query 118748 TATTACTCGT 118757 | ||| |||| Sbjct 56001 TCTTAATCGT 56010 Score = 89.7 bits (98), Expect = 4e-13 Identities = 172/249 (69%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | ||||| || || || || | ||||| ||||| || ||||| ||||| | Sbjct 56227 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATC--TG 56284 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| || | | |||||| | || ||||| || | || | | ||||||||||| | Sbjct 56285 ATAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTG 56344 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 |||| || ||||| ||| |||||| || || | || | ||| |||| || | || Sbjct 56345 GTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGAT-TCA 56403 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCT 118748 || |||| || | || || || |||| ||||| ||||| |||||||| || | || Sbjct 56404 ACATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATTCCTCCTCCT 56463 Query 118749 ATTACTCGT 118757 ||| |||| Sbjct 56464 CTTAATCGT 56472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433818625165084