Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq598 282 4e-71 seq1515 163 3e-35 >seq598 Length=26426 Score = 282 bits (312), Expect = 4e-71 Identities = 624/920 (68%), Gaps = 23/920 (3%) Strand=Plus/Plus Query 15902 AGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACT 15961 ||| |||| || | ||| ||| | | | |||||| ||| ||||| ||| ||| Sbjct 2443 AGACAAAAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACA 2502 Query 15962 CTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGA 16021 | |||||||| || ||||||||||||| || ||||| ||||| ||| ||||||| Sbjct 2503 CGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGA 2562 Query 16022 TTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAACAATAATCTATCCGCCACA 16078 ||||||| | || | ||| || || || |||||| ||||| ||| || ||| Sbjct 2563 TTTTTTGCATAAAAAATTTTTGAACAACCTAAACATTCCAA---TAATCGATCTGCTACA 2619 Query 16079 AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCT 16138 |||||||||||||| |||||| | ||||| || ||||| | | ||| | | | Sbjct 2620 AATTCTATATACTGAGACATTAATCTTGAATTCATCCCAATTAAATCACAAGGTAGAGAT 2679 Query 16139 TCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACA-CT 16197 || || ||| | |||| | | ||| ||||| | | |||| | | || || || Sbjct 2680 TCACATATGAAAGATCTTTCAACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCT 2739 Query 16198 ATT--TAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAAT 16255 | ||| | | |||||| || | |||| |||| |||||| ||| ||| Sbjct 2740 TCTGGTAATTTATTTTCTAATAAAC---TATATATTAAACAATTAAAATCTGTATGTAAT 2796 Query 16256 CCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC-TGGCATTAGTCCTCGTTT 16314 ||||| || ||||| |||| || || ||| ||||| || || ||| | || |||| Sbjct 2797 CCTTCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCATGTAATTTATTCT-GTTT 2855 Query 16315 TTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAA 16374 ||||| |||||| || || ||| |||| ||| | |||||||||||| ||| Sbjct 2856 TTTAAACCAAAAAATTGCACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATT 2915 Query 16375 TGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatt 16434 ||| || | || || | | | |||| || | |||||||||| ||||||| Sbjct 2916 TGCTACAATTCTTTCTGCAAATGA---ATTTGTATCATTTATCCATTTTGCAGCCCAAAG 2972 Query 16435 tgctttttgtttAACA-CAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTT 16493 |||||| | ||||| | | | || || || || |||| |||||||| ||||| Sbjct 2973 TGCTTTATTCTTAACTGCTGGT-ATATTTTCAATAGCATGAAATAAATTTAAACGTTCTT 3031 Query 16494 TGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCA 16553 | |||| |||||| |||| || |||||||| ||| |||||||||| || || || | Sbjct 3032 TATCATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTA 3091 Query 16554 TTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACC 16613 |||||| ||||| ||||| | ||||||| | ||||| ||||| ||||| | Sbjct 3092 CTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCT-TAAAAAC 3150 Query 16614 TTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGT 16672 || || || || ||||| ||||| ||||| |||||||||||||| || | | ||| Sbjct 3151 TTACTAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGT 3210 Query 16673 TTAATAAAAtttttttCGTTATC-TGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAA 16731 |||||||||| |||||| || || | || |||| | | || ||||| ||||||| Sbjct 3211 TTAATAAAATGTTTTTCATTTTCATTTAATTTTTCA-AAATCTTTTAAATCACTTGATAA 3269 Query 16732 ATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 ||| | ||||| | |||||||| || || | || |||||||| | | ||| | || Sbjct 3270 ATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATC 3329 Query 16792 TTCGTAAACAATAGGAAACA 16811 | ||| | ||| ||| ||| Sbjct 3330 TGGGTATAAAATTGGATACA 3349 >seq1515 Length=1449 Score = 163 bits (180), Expect = 3e-35 Identities = 211/286 (74%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||||||| |||| |||| ||||||||| |||| || || ||||| || | ||||| || Sbjct 588 AATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTG 529 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCT-GCTA 16622 |||| |||||| | ||||||| ||||||||| || ||||| || || || | Sbjct 528 AAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCT-TAAAAATTTACTAGCCA 470 Query 16623 AGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAt 16682 | ||||| ||||||||||| |||||||||||||| || | | ||||| ||||||| Sbjct 469 AATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAAT 410 Query 16683 ttttttC-GTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCT 16741 |||||| ||| | || |||| | |||| ||||| |||||||||| | ||| Sbjct 409 GTTTTTCATTTACATTTAATTTTTCA-AAGTCTTTCAAATCACTTGATAAATCTATTTCT 351 Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATA 16787 || |||||||||| || || |||| |||||||| | ||||||| Sbjct 350 TCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATA 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462499124822200