Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq598 242 4e-59 seq1515 161 1e-34 >seq598 Length=26426 Score = 242 bits (268), Expect = 4e-59 Identities = 621/928 (67%), Gaps = 27/928 (3%) Strand=Plus/Plus Query 13875 AAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTT 13934 ||||||| | ||| | | | | || ||||| || ||| ||||| ||| ||| | || Sbjct 2447 AAAAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTT 2506 Query 13935 TTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTG 13994 ||||||| ||||| ||||| |||| || || || ||||| ||| ||| |||||| Sbjct 2507 TTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTT 2566 Query 13995 TTGACATAAACACTTTATCA-CAACCTAG---TTCTAATAGTAATCTATCCGCAATGAAC 14050 ||| |||||| | ||| | | ||||||| ||| |||| ||| ||| || | || Sbjct 2567 TTG-CATAAAAAATTTTTGAACAACCTAAACATTCCAATA---ATCGATCTGCTACAAAT 2622 Query 14051 TCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTG 14110 || ||||| ||||||||||| ||||||| || |||| | ||| | | ||| Sbjct 2623 TCTATATACTGAGACATTAATCTTGAATTCATCCCAATTAAATCACAAGGTAG-AGATTC 2681 Query 14111 GT-TAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATT 14169 || || | |||| | ||||| || || | |||| | ||| || ||| | Sbjct 2682 ACATATGAAAGATCTTTCAACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTC 2741 Query 14170 AGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAATCACAATGAAGGCCC 14227 | | | |||||| | || | |||||||| |||||| ||| | || Sbjct 2742 TG--GTAATTTATTTTCTAATAAACTATATATTAAACAATTAAAATCTGTATGTAATCCT 2799 Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCATCAATCCTCGtttttt 14286 |||||||||||||| ||||| || ||| || | ||| || || || || ||||||| Sbjct 2800 TCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCATGTAATTTATTCT-GTTTTTT 2858 Query 14287 tAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 |||||||| |||||| || || ||| | ||| || ||||| ||| || Sbjct 2859 AAACCAAAAAATTGCACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGC 2918 Query 14347 TATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGA 14406 || | || |||| |||| || | | | || |||||||||| |||||| | Sbjct 2919 TACAATTCTTTCTGCAAATGAATTTGTATCATT---TATCCATTTTGCAGCCCAAAGTGC 2975 Query 14407 tttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGT 14466 ||| || |||| || |||||||||||| |||||||| | |||||| Sbjct 2976 TTTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATC 3035 Query 14467 ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGC 14526 | | || || ||||||||||||| || ||| |||| || ||||||||||| | || Sbjct 3036 ATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGC 3095 Query 14527 TATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTC 14586 ||| ||||| ||||| | ||||||||| ||| || ||| ||||| ||| | Sbjct 3096 TATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACTTCT-CTTAAAAACTTAC 3154 Query 14587 -GGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAA 14645 ||||||||||| ||||||||||||||||||||||||||||| || | | ||||| Sbjct 3155 TAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAA 3214 Query 14646 TAAA--GTATTGC-TCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGAT 14702 |||| || || | | ||||| | | ||||| |||| |||||| | || | || Sbjct 3215 TAAAATGTTTTTCATTTTCAT---TTAATTTTTCAAAATCTTTTAAATCACTTGATAAAT 3271 Query 14703 CTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTT 14762 ||| ||| ||| |||||||||| || | ||||||||||| | |||| | ||| Sbjct 3272 CTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATCTG 3331 Query 14763 TATATAATATAGGAAAAACTACAAATCT 14790 ||||| || ||| | | | |||||| Sbjct 3332 GGTATAAAATTGGATACAATGTAAATCT 3359 >seq1515 Length=1449 Score = 161 bits (178), Expect = 1e-34 Identities = 252/353 (71%), Gaps = 12/353 (3%) Strand=Plus/Minus Query 14430 TTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAAT 14487 |||||||||||| |||||||| | | |||| || | ||| ||| || ||||||| Sbjct 631 TTTCAATAGCATGAAATAAATTTAACCTCTCCTTCTCATCCTT--AATATAATTATCAAT 574 Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547 | ||| ||||| ||||||||||||| ||||| | |||||| |||||| |||||| Sbjct 573 TAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTT 514 Query 14548 TCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14607 | ||||||| |||||||||| ||||| | ||||||||||| ||||| Sbjct 513 TTTAGCTTCAATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTAT 454 Query 14608 ACCATCACTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGC-TCTTCATT 14664 ||||||||||||||||||||||| | | ||||||| | || || || | | | |||| Sbjct 453 TCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATT 394 Query 14665 GCTGAGTTTTTTCCAA-TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAA 14723 | | |||||| || || ||||| | || | ||||| ||| ||| | ||||||| Sbjct 393 --TAA--TTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAA 338 Query 14724 AACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGA 14776 | || ||||||||||||| | ||||| ||| ||||| |||||| Sbjct 337 ATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGATATATAATAGGA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482332172704360