Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq139 122 1e-22 >seq139 Length=46061 Score = 122 bits (134), Expect = 1e-22 Identities = 300/452 (66%), Gaps = 25/452 (6%) Strand=Plus/Minus Query 104167 GACGATAGAACAGGAATTGGAACTAAAAATGTATTTGGAGAACAATTAAAATTTAATTTA 104226 || |||||||||||| |||| || | ||||||| | | || | ||||||| Sbjct 37619 GATGATAGAACAGGAGTTGGTGTATTAAGTAAATTTGGATATATGATGAAGTATAATTTA 37560 Query 104227 AGAACATCTTTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAAAGGAGTTGTAGAAGAA 104286 || |||||| || |||| || || ||| | ||| | |||| || | |||||| Sbjct 37559 GCTGAATATTTTCCCCTATTAACAACCAAGAAATTATTTATAAGAGGAATTATTGAAGAA 37500 Query 104287 CTCTTATGGTTTATTAGCGGGAGTACAGATGT---TTCTGTATTAAATCAAAAAGGAGTT 104343 | | |||||||| || ||| ||| ||| | | | |||||| |||| | | Sbjct 37499 TTACTTTGGTTTATAAGAGGGGAAACAAATGGAAATATTTTGTTAAATAAAAATG---TG 37443 Query 104344 AAAATTTGGAATAAAAATGCA------GAATCGTTTTATACACAACAAAATCTTTTTaaa 104397 | ||| ||| | ||||| | |||| ||||| | | | ||| | ||| | | Sbjct 37442 AGAATATGGGAAGCAAATGGAACTAGAGAAT--TTTTAGATAATAGAAATTTATTTGATA 37385 Query 104398 aa-----aaaTGATTTAGGACCTATTTATGGTTTTCAGTGGAGACATTATGG---TGAAA 104449 | |||||||||||| || |||||||||||||| |||||||||| ||| |||| Sbjct 37384 GAGAAGTAAATGATTTAGGTCCAATTTATGGTTTTCAATGGAGACATTTTGGAGCTGAAT 37325 Query 104450 ATTATATTGGGTGCGATAATAAATATGGT---GGTATAGATCAACTCAAAAATATTATTA 104506 || | | || |||||| | || | || || |||||||| ||||||||||| | Sbjct 37324 ATACAAATATGTATGATAATTATGATAATAAAGGAATTGATCAACTAAAAAATATTATAA 37265 Query 104507 CAACAATTCAAAATGAACCTTGGGATAGAAGAATGATATTATTAGCTTGGAACCCAAAGG 104566 || |||||||||| | ||||||||| || || | || |||||| ||||| Sbjct 37264 ATTTGATAAAAAATGAACCATTAAGTAGAAGAATTATTTTGTGTGCATGGAACGTAAAGG 37205 Query 104567 ATAATTCTAAAATGGCACTTCCTCCTTGTCAT 104598 || |||||||||| | || ||||||||| Sbjct 37204 ATTTGGATAAAATGGCATTACCACCTTGTCAT 37173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679795475666640