Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq598 123 2e-23 seq546 86.0 6e-12 >seq598 Length=26426 Score = 123 bits (136), Expect = 2e-23 Identities = 206/295 (70%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 57536 TAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595 ||||||| ||| ||| ||| ||| ||||| ||||| | | || ||||| ||||| Sbjct 3360 TAGATTTACATTGTATCCAATTTTATACCCAGATGTTTGGGATTTTTATAAAAAAGCAGA 3301 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC 57655 |||||| |||||||| | |||||| |||| | || | ||| | | |||| || Sbjct 3300 AGCATCATTTTGGACAGCTGAAGAAATAGATTTATCAAGTGATTTAAAAGATTTTGAAAA 3241 Query 57656 CCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGA 57715 | || ||| ||| | | ||||||||||||| || || || ||||| || || || Sbjct 3240 ATTAAATGAAAATGAAAAACATTTTATTAAACATGTTTTAGCATTTTTTGCAGCTAGTGA 3181 Query 57716 TGGTATTGTTAACGAGAATTTGG-TCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGG 57774 |||||| || || ||||||| | | ||| |||| | |||||| ||| | || || | Sbjct 3180 TGGTATAGTATTAGAAAATTTGGCTAGTAAG-TTTTTAAGAGAAGTTCAAATTACAGAAG 3122 Query 57775 CGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTA 57829 | | | |||||| ||||||| | || | |||||| | |||||||||| ||| Sbjct 3121 CTAAAAAATTTTACTCATTTCAAATAGCAGTAGAAAACATACATTCAGAAACGTA 3067 >seq546 Length=57643 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || ||||||| || || |||||| |||| |||||| | || Sbjct 55991 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG 55932 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || ||| || |||||||| | || ||||| ||| Sbjct 55931 GATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAG 55872 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | ||||||| || || || || |||||||| | | || || | | |||||||| Sbjct 55871 CAAAGATTAATATTTGCAGGAAAGCAATTGGAAGA-TGGAAGAACATTATCAGATTATAA 55813 Query 31372 CATTCAAAAAGAATCGACT 31390 ||| || |||||||| ||| Sbjct 55812 CATCCAGAAAGAATCTACT 55794 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || ||||||| || || |||||| |||| |||||| | || Sbjct 56222 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG 56163 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || ||| || |||||||| | || || || ||| Sbjct 56162 GATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAG 56103 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | ||||||| || || || || |||||||| | | || || | | |||||||| Sbjct 56102 CAAAGATTAATATTTGCAGGAAAGCAATTGGAAGA-TGGAAGAACATTATCAGATTATAA 56044 Query 31372 CATTCAAAAAGAATCGACT 31390 ||| || |||||||| ||| Sbjct 56043 CATACAGAAAGAATCTACT 56025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445753990977840