Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq546 383 2e-101 seq598 206 3e-48 seq1515 163 4e-35 >seq546 Length=57643 Score = 383 bits (424), Expect = 2e-101 Identities = 997/1512 (66%), Gaps = 25/1512 (2%) Strand=Plus/Plus Query 62365 CTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAA 62424 || |||| | ||| || || || || |||||||||| | |||||| | | ||||| Sbjct 4544 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4603 Query 62425 TATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 62484 |||| || || |||||||| | || ||||| ||||| || || || | ||| ||||||| Sbjct 4604 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4663 Query 62485 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 62544 | ||||||||||| | | ||| |||||| | || | | || | ||||| ||||| | Sbjct 4664 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4723 Query 62545 GATGTTCCCAATTCCAAAGATC-----CGACGGTACAACANNNNNNNNNNNATATTGTAG 62599 | | |||||||||| | | || | | | | |||| || Sbjct 4724 GTTCAGTCCAATTCCAATATTTATTATCAACCTTT--ATATTCCACATATCAAATTGAAG 4781 Query 62600 AATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTA 62658 |||||| | || || | || | ||| |||| | |||||| || | | | ||||| Sbjct 4782 AATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTGAGCTA 4840 Query 62659 GTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGAT 62718 || | | ||||||||| | ||||| || |||||||| || | ||||||| | Sbjct 4841 ATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATT 4900 Query 62719 CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTT 62778 ||| |||||| || | ||||| |||| || ||||| | || |||||||||| Sbjct 4901 CTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAATCCTT 4960 Query 62779 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 62838 | |||||||| || || ||||||||||| | || || ||||||||||| || ||||| Sbjct 4961 GTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACAGGAT 5020 Query 62839 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCA 62898 ||||||| | ||||||||||| | | |||||| ||| | ||| | || | | Sbjct 5021 AATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCATATA 5080 Query 62899 GTTTGAGAAAATCAAA---TCGCCCATCTAT---TACAAACATGTTCAATGCAACAGATG 62952 ||| ||||| ||| | ||| | |||||| | || |||| ||||| Sbjct 5081 ATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATAGATG 5140 Query 62953 CCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGAT 63012 | | ||||| || || || |||| | | ||||| ||||| ||| || |||| Sbjct 5141 CTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACATAGAT 5200 Query 63013 TACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 63072 ||||||| || || || |||||||||| ||||||| || ||||| | ||| |||| Sbjct 5201 TACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTTAT 5260 Query 63073 AAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 63132 | | || |||| ||| ||||| || ||| || || ||| || ||| | || Sbjct 5261 ACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAATCTT 5320 Query 63133 GAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGAGTATACAATCGTT 63189 | || || || || ||| | || ||||| ||| ||| ||| ||| || Sbjct 5321 GCGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAATTTTT 5377 Query 63190 CGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACC 63249 | || || || ||||| | || | |||||||||| |||||||| || | || Sbjct 5378 CAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATGTCC 5437 Query 63250 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63309 | | | | || || |||| ||||||||| | ||| || | ||||| ||| ||||| Sbjct 5438 AATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAAAATA 5497 Query 63310 GATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63369 |||||| | || ||| || || || ||| ||| | | ||| || ||| | | | Sbjct 5498 AATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCAAATA 5557 Query 63370 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63429 |||| |||||||| ||||| | |||| || | ||| | ||| ||| || | Sbjct 5558 TATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACCTT 5617 Query 63430 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTTGAT 63488 |||||| |||||||| || | ||| ||||||| |||||||| | |||| ||||||||| Sbjct 5618 GATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTTGAT 5676 Query 63489 ATACCATTGGTACCGGAGATATA-GCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 |||||||| || || ||||| | | | |||| |||| | || || ||| Sbjct 5677 ATACCATTTGTTCCTCTTATATATGAATTTTGT-CCACGTATATCTTGTACTGCTACACC 5735 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 || || ||||| ||||| || || || ||| | ||||| || ||| | || ||||| Sbjct 5736 AATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATTCCTTC 5795 Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCC 63667 || ||| | |||| |||| |||||| ||||| || | | | || || Sbjct 5796 AATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGTGTCCC 5855 Query 63668 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63727 | ||||||||| || || | || || ||||| |||||| || | |||| || || Sbjct 5856 TGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATATGT 5915 Query 63728 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63787 || | ||| |||| ||| | ||| || || | || || | ||||| || || Sbjct 5916 TTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATCAAATG 5975 Query 63788 CTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63847 || |||||||| | |||||| || || || ||| || || || |||| || ||||| Sbjct 5976 TTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAACGTTTT 6035 Query 63848 AAAACCAAAATA 63859 |||||||||||| Sbjct 6036 AAAACCAAAATA 6047 >seq598 Length=26426 Score = 206 bits (228), Expect = 3e-48 Identities = 576/870 (66%), Gaps = 24/870 (3%) Strand=Plus/Plus Query 33272 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 33331 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 2466 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 2525 Query 33332 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAttttttt 33391 ||||| | || || ||||| ||| ||| ||||| | ||| |||||||| Sbjct 2526 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGA 2585 Query 33392 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCAT 33448 | | || || ||| ||| |||| |||||| || ||||||||||| ||| | Sbjct 2586 ACAACCTAAACATTCC--AAT-AATCGATCTGCTACAAATTCTATATACTGAGACATTAA 2642 Query 33449 TTCACAATTCATTCCTATGAGTTTAACTGGAAGAGC--CACAGTAAGAAAT-TCTTGTTC 33505 | ||||||| || || | | | || |||| |||| || |||| |||| || Sbjct 2643 TCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACA-TATGAAAGATCTT--TC 2699 Query 33506 AATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGT---AA 33562 || || || | | | | |||| | |||| |||||| | || | || Sbjct 2700 AACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAA 2759 Query 33563 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAA 33622 |||| || | || ||||| ||||| || | || || ||||||||||||| Sbjct 2760 TAAAC---TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAG 2816 Query 33623 TTCGTTAGAAAACGTGAGTCCGGGCA--TTAGGCCACGCTTTTTAAGCCAAAATATGGAA 33680 ||| ||| ||| || ||||| | | ||| | | ||||||| |||||| || | | Sbjct 2817 TTCATTACTAAAAGTAAGTCCATGTAATTTATTCT--GTTTTTTAAACCAAAAAATTGCA 2874 Query 33681 GCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA 33740 || || ||| | || ||||| || ||| || | || ||| ||| || Sbjct 2875 CAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCA 2934 Query 33741 TAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 | | |||| |||||| ||| ||||||| || || || || || || Sbjct 2935 AATGAATTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGT 2994 Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33860 || |||| || |||| ||| | || ||| ||| |||||| | |||| |||| Sbjct 2995 ATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATCA 3054 Query 33861 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 || | | ||| ||| |||| ||||| |||||||| | || || |||||| ||| || Sbjct 3055 ATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAAT 3114 Query 33921 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCAC 33979 | |||| || ||||| || |||||| | |||| | | || || |||||||| || Sbjct 3115 TTTTTAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATAC 3173 Query 33980 TATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 34039 ||| |||||||| ||||||||||| || || |||||||| ||||||| |||||| | | Sbjct 3174 TATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTC 3233 Query 34040 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 34099 ||| ||| | |||| || | ||| | |||| ||| | |||||| |||||||||| Sbjct 3234 ATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAA 3293 Query 34100 TGATGCCTCTGCCTTTTTATACATATTCCA 34129 |||||| ||||| |||||||| | || ||| Sbjct 3294 TGATGCTTCTGCTTTTTTATAAAAATCCCA 3323 >seq1515 Length=1449 Score = 163 bits (180), Expect = 4e-35 Identities = 221/303 (73%), Gaps = 4/303 (1%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 ||| |||| |||| |||| || || | |||||| |||| || || || ||||||| || Sbjct 594 ATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGC 535 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || ||||| || || | |||| || | || || || ||| | ||||| | | Sbjct 534 TATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAATT-TAC 476 Query 33962 T-GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTA 34020 | || |||||||| |||||||||||||| ||||||||||| || || |||||||||| Sbjct 475 TAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTA 416 Query 34021 TAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATATCC 34079 |||||| |||||| | | ||| ||| ||| || || || | ||| | |||| ||| Sbjct 415 TAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCT 357 Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 | |||||| | ||||||||||| || || || |||||||| | |||||| | ||| || Sbjct 356 ATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGA 297 Query 34140 TAT 34142 ||| Sbjct 296 TAT 294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629800067452560