Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq546 643 1e-179 seq598 331 9e-86 seq1515 163 3e-35 >seq546 Length=57643 Score = 643 bits (712), Expect = 1e-179 Identities = 1056/1508 (70%), Gaps = 37/1508 (2%) Strand=Plus/Plus Query 37126 TGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTA 37185 || ||||| ||||| || |||||| | ||||||||| || ||||||||||| Sbjct 4555 TGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAATATTGCTAGTG 4614 Query 37186 TATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGT 37245 || ||||||| || ||||| || | |||||| || || ||||||||||||||||| ||| Sbjct 4615 TACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAGTAGGCATAGGT 4674 Query 37246 GCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAA 37305 |||| || | |||||| ||||||||| | || ||| | | ||| |||||| ||||| Sbjct 4675 GCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAAGTTCAGTCCAA 4734 Query 37306 TCCCATAAATCTGTTGGGTTCTTTAA----CCACATATCATATTGTAGAATACCTTTACT 37361 | ||| | || | || | || | |||||||||| |||| |||||||||| || Sbjct 4735 TTCCA-ATATTTATTATCAACCTTTATATTCCACATATCAAATTGAAGAATACCTTGGCT 4793 Query 37362 CGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGA 37421 |||||| | | | ||| | ||||| || ||||||| ||||| ||| || |||| Sbjct 4794 AGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTGAGCTAATTC-CA--TAGA 4850 Query 37422 ---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTC 37478 ||||| ||| |||||||| || ||||| |||||| | |||||||| ||||||||| Sbjct 4851 CATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATTCTTTTGCTTC 4910 Query 37479 TTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGAT 37538 || ||| | | ||| | || | ||||| |||||| || || || ||||| || Sbjct 4911 ATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAATCCTTGTACACCAAT 4970 Query 37539 ACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGAT 37598 ||||| ||||||||| | | || ||||| | |||| | || ||||||||||| | Sbjct 4971 TCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACAGGATAATAATTTCT 5030 Query 37599 ATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA 37658 ||||| ||||| | || |||| | | ||||| |||||| || || | || Sbjct 5031 TTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCATATAATTTTTTAAA 5090 Query 37659 CATAAATACGTTATTAT---TA---ACAAATTTACTCAACGAAATAGATCCTAGATTACA 37712 |||| | || || | || |||||||||| || | ||||||| ||| ||||| Sbjct 5091 ATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATAGATGCTAAGTTACA 5150 Query 37713 TACAGCAACTTCATCTTCGTTAC-TAAATTGTATAATCTCTGTACAGAGATTACTCGATC 37771 ||||||||||||||| || | || ||| || || || ||| |||||||| || Sbjct 5151 AACAGCAACTTCATCTG-GTGATGTATATTCGATTATTTCACAACATAGATTACTACATT 5209 Query 37772 TAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATAT 37831 ||||||| || ||||| ||||||| ||||| |||||| ||||||||||| | |||| Sbjct 5210 TAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTTATACAACATAT 5269 Query 37832 ACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAA 37891 | || ||| |||||||||| | | ||||| ||||||| |||||| ||| Sbjct 5270 ATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAA--TCTTGCGCTAA 5327 Query 37892 CGATCGCTTTAAttt-----ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATC 37946 | | ||| || ||||||| ||| |||| | ||||||||| | ||| || Sbjct 5328 T-ACAGTTTTTTTTCCTAAATTTTCTTC--TTCATATTTTTCATATAATTTTTCAAATTC 5384 Query 37947 ATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTC 38006 | |||||| || | ||| ||||||||||| ||||||||||| | ||| | || Sbjct 5385 TTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATGTCCAATTTTT 5444 Query 38007 ATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTT 38066 || || || || | || |||||| ||||| |||||||| | ||| |||||||||| | Sbjct 5445 ATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAAAATAAATCTCT 5504 Query 38067 GGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGC 38126 | || ||||||| || || ||| ||||| || |||||| || |||||||| | Sbjct 5505 AGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCAAATATATCTGA 5564 Query 38127 GTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAAT 38186 ||||||||||| ||||| | | | || |||| |||||| | || || |||| | Sbjct 5565 ATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACCTTGATCTAC 5624 Query 38187 ATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTT 38246 ||||||| |||| | ||| | | ||||||||| ||||||| || || ||| | || || Sbjct 5625 ATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAATCCGTTTGATATACCATT 5684 Query 38247 TATACCGGATATATAAGTACCCTTAGCTCGTATAT----TACTTATCGACAATCCTATTC 38302 | | || |||||| | | | | ||||||| |||| | ||| || || | Sbjct 5685 TGTTCCTCTTATATATGAATTTTGTCCACGTATATCTTGTACT--GCTACA--CCAATAC 5740 Query 38303 CACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATAC 38362 |||||||| ||| ||| ||||| ||||| ||||| || ||||| || ||||| || Sbjct 5741 CACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATTCCTTCAATCG 5800 Query 38363 TGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGT 38422 || | || || ||||| |||||| ||||| || || ||| || || | | Sbjct 5801 AATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGTGTCCCTGAAT 5860 Query 38423 TAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTA 38482 |||||||||| || | ||||||| | || |||||| |||| || ||||||||||| Sbjct 5861 TAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATATGTTTCTA 5920 Query 38483 TTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTG 38542 | | | |||| |||| | || ||||| | ||||| ||||||| || |||||||| Sbjct 5921 ATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATCAAATGTTGTG 5980 Query 38543 GTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTC 38602 |||||||||| ||||||||||| | || ||| || ||||||| ||||| | | Sbjct 5981 GTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAACGTTTTAAAAC 6040 Query 38603 CAAAATAA 38610 |||||||| Sbjct 6041 CAAAATAA 6048 >seq598 Length=26426 Score = 331 bits (366), Expect = 9e-86 Identities = 584/839 (70%), Gaps = 18/839 (2%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || ||||| ||| ||| ||| ||| ||||| || || || |||| ||| || || | Sbjct 2485 TTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAA 2544 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | |||||||||| | | ||| || | |||| ||||||||| | ||| Sbjct 2545 TCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACCTAAACATTCCAAT 2604 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||| |||||| || ||||||||||||||||||||||| | ||||||| || || | | Sbjct 2605 AATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGAATTCATCCCAATTAAA 2664 Query 11519 TCCACCGGAATAG---CAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATT 11575 || || | || || | | ||| | || |||| | | ||| || || | | Sbjct 2665 TCACAAGGTAGAGATTCACATATGAAAGA-TC--TTTCAACTTCAACAGCTTCTTTAACA 2721 Query 11576 ATCGACGTTATAACTTCCTTAGATGGTGGATGT---AATAAATGTTTAAACATTAAACAC 11632 || | | |||||| | | | | || | |||||| || | |||||||| Sbjct 2722 ATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---TATATATTAAACAA 2778 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 |||||| |||||| ||||| |||||||| |||||||||||| ||| || | ||| Sbjct 2779 TTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCA 2838 Query 11693 GGCA-TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 | | | || || ||||||| | |||||| || ||| ||| |||| ||| | ||| Sbjct 2839 TGTAATTTATTCT-GTTTTTTAAACCAAAAAATTGCACAAAAACTACCACTAAATAGTAT 2897 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-ACCTTGTTGCTAGATATCC 11810 || || ||| |||| |||||| | ||||||| || || | |||| | | ||||| Sbjct 2898 ACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTGTATC-ATTTATCC 2956 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 ||||| |||||| ||||| || || || | || |||| ||||| | ||||| Sbjct 2957 ATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATA 3016 Query 11871 AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930 ||| | |||| ||| |||| ||| ||| |||| || | |||||| ||| |||||| Sbjct 3017 AATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTG 3076 Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTA 11990 |||| || ||||| | |||||||||||| || || | || |||| | || | Sbjct 3077 AATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAA 3136 Query 11991 CATCCACATAAAATCTTTCC-GCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 | || | ||||| ||| | || ||||| || ||| ||||||||||||| ||||||| Sbjct 3137 CTTCT-CTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAA 3195 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109 ||||||| | |||||| ||||| | |||||| | || | ||||||| || |||| | | Sbjct 3196 AATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTT 3255 Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATA 12168 ||||| |||||||||||| ||||||| | |||||||| ||| ||| || |||||| Sbjct 3256 AAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 3314 >seq1515 Length=1449 Score = 163 bits (180), Expect = 3e-35 Identities = 248/348 (71%), Gaps = 4/348 (1%) Strand=Plus/Minus Query 11853 TTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTA 11912 |||| ||||| | |||||||| | | || | | ||| | | ||| |||| |||| Sbjct 631 TTTCAATAGCATGAAATAAATTTAACCTCTCCTTCTCATCCTTAATATAATTATCAATTA 572 Query 11913 ATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATC 11972 |||||||||| |||| || || |||||||| | |||||||||||| ||| |||| | Sbjct 571 ATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATA-AAACTTT 513 Query 11973 GTGCCTCTGAACACT-GTACATCCACATAAAATCTTTCC-GCTAAATTCTCATTTACAAT 12030 | || | | | |||| || | ||||| || | || ||||| || ||| || Sbjct 512 TTAGCTTCAATTATTTGTACCTCT-CTTAAAAATTTACTAGCCAAATTTTCTAATACTAT 454 Query 12031 ACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGT 12090 |||||||||| |||||||||||||| | |||||||||||| | |||||| | | | | Sbjct 453 TCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATT 394 Query 12091 TAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACT 12150 |||||| || | || | ||||| |||||||||||| ||||||| | |||||||| Sbjct 393 TAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGA 334 Query 12151 TGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGG 12198 || | | || |||||| | ||||| | ||| |||| ||||||| Sbjct 333 GGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGATATATAATAGG 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468511757440880