Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq546 369 5e-97 seq598 224 1e-53 seq1515 174 2e-38 >seq546 Length=57643 Score = 369 bits (408), Expect = 5e-97 Identities = 996/1517 (66%), Gaps = 35/1517 (2%) Strand=Plus/Plus Query 65158 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 65217 || |||| | ||| ||||| || || ||||||||| | |||||| | | ||||| Sbjct 4544 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4603 Query 65218 TATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 65277 |||| || || |||||||| | ||| ||||| ||||| || || || | ||| ||||||| Sbjct 4604 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4663 Query 65278 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 65337 | ||||||||||| | | ||| |||||| | || | | || | ||||| ||||| | Sbjct 4664 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4723 Query 65338 GAGGTTC---CCAATTCCAAAG------ATCCGACGGTACAACNNNNNNNNNNNNNNNTT 65388 | ||| |||||||||| ||| | || | || Sbjct 4724 G---TTCAGTCCAATTCCAATATTTATTATCAACCTTTATA---TTCCACATATCAAATT 4777 Query 65389 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 65447 | |||||||| | || || | || | ||| |||| | || ||| || | | | | Sbjct 4778 GAAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTGA 4836 Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 65507 |||| ||| | | ||||||||| | ||||| || ||||| || || | |||||| Sbjct 4837 GCTAATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTT 4896 Query 65508 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 65567 | |||| |||||| || | ||||| |||| || ||||| | || |||||| Sbjct 4897 AATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAAT 4956 Query 65568 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 65627 ||||| |||||||| || || ||||||||||| | || || ||||||||||| || | Sbjct 4957 CCTTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACA 5016 Query 65628 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 65687 ||||||||||| | ||||||||||| | | |||||| ||| | ||| | || Sbjct 5017 GGATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCA 5076 Query 65688 TTCAGTTTGAGAAAATCAAA-----TCGCTCATCTAT-TACAAACATGTTCAATGCAACA 65741 | | ||| ||||| ||| | | | ||| |||||| | || |||| | Sbjct 5077 TATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATA 5136 Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 ||||| | |||||||| || || |||| | | ||||| ||||| ||| || Sbjct 5137 GATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACAT 5196 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 ||||||||||| || || || |||||||||| ||||||| || ||||| | ||| Sbjct 5197 AGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCT 5256 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 65921 ||||| | || |||| ||| ||||| || ||| || || ||| || ||| | Sbjct 5257 TTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAA 5316 Query 65922 ACTCGAGCCTTTATTATAGATTTGTATCTC---TTTTCTCTTTCGTATAGTGTATACAAT 65978 || | || || || || ||| | || |||||| ||| ||| | ||| ||| Sbjct 5317 TCTTGCGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAAT 5373 Query 65979 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 66038 ||| || || || ||||| | || || |||||||||| |||||||| || Sbjct 5374 TTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAAT 5433 Query 66039 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 | ||| | | | || || |||| ||||||||| | ||| || | ||||| ||| | Sbjct 5434 GTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAA 5493 Query 66099 AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 ||||||||||| | || ||| || || || ||| ||| | | ||| || ||| | Sbjct 5494 AATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCA 5553 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | ||||| ||||||| ||||| | |||| || | ||| | ||| ||| Sbjct 5554 AATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCA 5613 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATT 66277 || ||||||| |||||||| || | ||| ||||||| |||||||| | |||| || || Sbjct 5614 CCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTT 5672 Query 66278 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG--CACGAATATTACTAATTGAT 66335 ||| ||||||| || || ||||| | ||| |||| |||| | || | Sbjct 5673 TGATATACCATTTGTTCCTCTTATATA--TGAATTTTGTCCACGTATATCTTGTACTGCT 5730 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| || || ||||| ||||| || || || ||| | ||||| || ||| | || Sbjct 5731 ACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATT 5790 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455 || || || ||| | |||| |||| |||||| ||||| || | | Sbjct 5791 CCTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGT 5850 Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || | ||||||||| || || | || || ||||| |||||| || | |||| Sbjct 5851 GTCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGA 5910 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || || | ||| |||| ||| | ||| || || | || || | ||||| | Sbjct 5911 TATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATC 5970 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 | || || |||||||| | || || || || || ||| || || || |||| || Sbjct 5971 AAATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAAC 6030 Query 66636 GTTTTAAAACCAAAATA 66652 ||||||||||||||||| Sbjct 6031 GTTTTAAAACCAAAATA 6047 >seq598 Length=26426 Score = 224 bits (248), Expect = 1e-53 Identities = 605/909 (67%), Gaps = 26/909 (3%) Strand=Plus/Plus Query 35848 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 35907 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 2466 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 2525 Query 35908 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttttt 35967 |||| || || || ||||| ||| || ||||| | ||| | |||||||| Sbjct 2526 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGA 2585 Query 35968 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 36024 | | || || ||| ||| |||| |||||| |||||||||||||| ||| | Sbjct 2586 ACAACCTAAACATTCC--AAT-AATCGATCTGCTACAAATTCTATATACTGAGACATTAA 2642 Query 36025 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAAT-TCTTGTTC 36081 | ||||||| || || | | | || |||| |||| || |||| |||| || Sbjct 2643 TCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACA-TATGAAAGATCTT--TC 2699 Query 36082 AATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATAC---AA 36138 || || || ||| | | |||| | | || |||||| | || || Sbjct 2700 AACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAA 2759 Query 36139 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 36198 |||| || | || ||||| ||||| |||| || || ||||||||||||| Sbjct 2760 TAAAC---TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAG 2816 Query 36199 TTCGTTGGAAAACGTGAGTCCGGGCA--TTAGGCCACGCTTTTTAAGCCAAAATATGGAC 36256 ||| || ||| || ||||| | | ||| | | ||||||| |||||| || | | Sbjct 2817 TTCATTACTAAAAGTAAGTCCATGTAATTTATTCT--GTTTTTTAAACCAAAAAATTG-C 2873 Query 36257 GCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 36315 |||| | ||| ||| | || ||||| || ||| || | || ||| ||| | Sbjct 2874 ACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGC 2933 Query 36316 ATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 | | | |||| |||||| ||| ||||||| || || || || || || Sbjct 2934 AAATGAATTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGG 2993 Query 36376 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 36435 || | || ||||||| ||| | || ||| ||| |||||| | ||| |||| Sbjct 2994 TATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATC 3053 Query 36436 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 ||| | | ||| ||| |||| ||||| |||||||| | || ||||||||| ||| || Sbjct 3054 AATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAA 3113 Query 36496 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCA 36554 | |||| || ||||| || |||||| | |||| | | || || |||||||| | Sbjct 3114 TTTTTTAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATA 3172 Query 36555 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTG 36614 |||| || ||||| ||||||||||| || || |||||||| ||||||| |||||| ||| Sbjct 3173 CTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTT 3232 Query 36615 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 36674 ||| ||| | |||| || | ||| | |||| ||| | |||||| ||||||||| Sbjct 3233 CATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAA 3292 Query 36675 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 36734 ||||||| ||||| |||||||| | || ||| | || | ||| ||||||| | | Sbjct 3293 ATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATCTGGGTATAAAATTGGATACAATG 3352 Query 36735 CAAATCTAT 36743 |||||||| Sbjct 3353 TAAATCTAT 3361 >seq1515 Length=1449 Score = 174 bits (192), Expect = 2e-38 Identities = 229/312 (73%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 ||| |||| ||| ||||||| || | |||||| |||| || || || ||||||| || Sbjct 594 ATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGC 535 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 |||||||| || || | |||| || | || ||||| ||| | ||||| | | Sbjct 534 TATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAATT-TAC 476 Query 36538 T-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 36596 | || |||||||| |||||||| ||||| ||||||||||| || || |||||||||| Sbjct 475 TAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTA 416 Query 36597 TAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATATCC 36655 |||||| |||||| ||| ||| ||| ||| || || || | ||| | |||| ||| Sbjct 415 TAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCT 357 Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 | |||||| | ||||||||||| || || || |||||||| | |||||| | ||| || Sbjct 356 ATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGA 297 Query 36716 TATTGAATTGGA 36727 ||| ||| ||| Sbjct 296 TATATAATAGGA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658154478114680