Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq546 403 3e-107 seq598 228 1e-54 seq1515 168 1e-36 >seq546 Length=57643 Score = 403 bits (446), Expect = 3e-107 Identities = 1118/1696 (66%), Gaps = 34/1696 (2%) Strand=Plus/Plus Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 || || |||||||| |||| || |||||||| | ||||| |||| || |||||| Sbjct 4363 TGGTCAATGAAGGCACCCCGATCGGCAGCCATATCGATGATGTTCTTCTGCTTGATTTCC 4422 Query 78919 CAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 78974 |||| ||| || || | ||| ||||| || || | | || ||| ||| | Sbjct 4423 CAAACAGTCTTGTAGAGCTC-CTTAAGGTCGCTAGGTATTTCGCTTATATACTGGACACT 4481 Query 78975 TCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 79034 ||| | || |||| | || || ||||||| ||| | | | || ||| Sbjct 4482 ACCATTGTGAGCAATAAGTTGTTGTTTCATGTCTTCATCCCAGAGTCCACGATCAAATAA 4541 Query 79035 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 79094 || |||| | ||| ||||| || || ||||||||| | |||||| | | ||| Sbjct 4542 GTCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTA 4601 Query 79095 AATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGC 79154 |||||| || || || ||||| | |||||||| ||||| || || || | ||| ||||| Sbjct 4602 AATATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGC 4661 Query 79155 CGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTT 79214 || ||||||||||| | | ||| |||||| | || | | | | ||||| ||||| Sbjct 4662 AGTAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTT 4721 Query 79215 TAGAGATTC---CCAATCCCAAAGATCAGACGGGACA---ACATTCCAAAGATCATATTG 79268 || ||| ||||| |||| | | || | |||||| | |||| |||| Sbjct 4722 AAG---TTCAGTCCAATTCCAATATTTATTATCAACCTTTATATTCCACATATCAAATTG 4778 Query 79269 TAGAATACCGTTACTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGG 79327 |||||||| | ||||| | | | ||| || | |||||| || | ||| | Sbjct 4779 AAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTGAG 4837 Query 79328 CTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGA 79387 ||||||| | | |||||||| | ||||| || ||||| ||||| | ||||| | Sbjct 4838 CTAATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTA 4897 Query 79388 GATCTTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 79446 |||| |||||| | | | || | ||||| |||| || ||||| | || |||||| Sbjct 4898 ATTCTTTTGCTTCATCTGAT-TCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAAT 4956 Query 79447 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATA 79506 ||||| |||||||| || || ||||||||||| | || || ||||||||||| || | Sbjct 4957 CCTTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACA 5016 Query 79507 GGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCC 79566 ||||||||||| | ||||||||||| | | ||| || || | ||| | || Sbjct 5017 GGATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCA 5076 Query 79567 TTTAGTTTGAGAAAATCAAA-----TCGTCCATCTAT-TACAAACATGTTCAACGCGACA 79620 | || ||| ||||| ||| | | | ||| |||||| | || || | | Sbjct 5077 TATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATA 5136 Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 ||||| | |||||||| || || |||| | | ||||| ||||||||| || Sbjct 5137 GATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACAT 5196 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 || |||||||| ||||| || |||||||||| ||||||| || ||||| | ||| Sbjct 5197 AGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCT 5256 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800 ||||| | || | || ||| ||||| || ||| || || ||| || ||| | Sbjct 5257 TTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAA 5316 Query 79801 ACTCGAGCCTTTATTATAGACTTGTATCTC---TTTTCTCTTTCGTATTGTGTATATAAT 79857 || | || || || || || | || |||||| ||| |||| | ||||||| Sbjct 5317 TCTTGCGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAAT 5373 Query 79858 CGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAAC 79917 ||| || || || ||||| || ||| || |||||||| | |||||||| || Sbjct 5374 TTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAAT 5433 Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 79977 | ||| | | || || || |||| ||||||||| | ||| || | ||||| ||| | Sbjct 5434 GTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAA 5493 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 |||| |||||| | || || || || || ||| ||| | | ||| || ||| | Sbjct 5494 AATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCA 5553 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | ||||| |||||||| ||||| | |||| || | ||| || ||| ||| Sbjct 5554 AATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCA 5613 Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCATT 80156 || ||||||| |||||||| || | ||| ||||||| |||||||| | |||| || || Sbjct 5614 CCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTT 5672 Query 80157 GGATGTACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATA 80215 ||| ||||||| || || ||||| | | | |||| |||| | || || Sbjct 5673 TGATATACCATTTGTTCCTCTTATATATGAATTTTGTC-CACGTATATCTTGTACTGCTA 5731 Query 80216 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 80275 ||| || || ||||| ||||| || || || ||| | ||||| || ||| | || | Sbjct 5732 CACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATTC 5791 Query 80276 CCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 80335 | || || ||| | |||| |||| |||||| ||||| || | | | Sbjct 5792 CTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGTG 5851 Query 80336 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 80395 | || | ||||||||| || || | || || ||||| |||||| |||| |||| | Sbjct 5852 TCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGAT 5911 Query 80396 ACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACA 80455 | || || | ||| ||||| ||| | ||| || || | | || | ||||| || Sbjct 5912 ATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATCA 5971 Query 80456 TGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAG 80515 || || |||||||| | || || ||||| || ||| || || || |||| || | Sbjct 5972 AATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAACG 6031 Query 80516 TTTTAAAACCAAAATA 80531 |||||||||||||||| Sbjct 6032 TTTTAAAACCAAAATA 6047 >seq598 Length=26426 Score = 228 bits (252), Expect = 1e-54 Identities = 584/872 (67%), Gaps = 28/872 (3%) Strand=Plus/Plus Query 49650 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 49709 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 2466 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 2525 Query 49710 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 49769 ||||| | || || ||||| ||| ||| ||||| | ||| | |||||||| Sbjct 2526 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGA 2585 Query 49770 AAATCCCAA---TTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCAT 49826 | | || || ||| ||| |||| ||| || |||||||||||||| ||| | Sbjct 2586 ACAACCTAAACATTCC--AAT-AATCGATCTGCTACAAATTCTATATACTGAGACATTAA 2642 Query 49827 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAG-TAAGAAAT-TCTTGTTCA 49884 | ||||||| || || | | | || |||| || || |||| |||| ||| Sbjct 2643 TCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTT--TCA 2700 Query 49885 ATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGC---AAT 49941 | || || ||| | | |||| | |||| |||||| | || ||| Sbjct 2701 ACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAAT 2760 Query 49942 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGT 50001 ||| || | || ||||| ||||| || | || || ||||||||||||||| Sbjct 2761 AAAC---TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGT 2817 Query 50002 TCGTTGGAAAACGTGAGTCCGGGCA--TTAGGCCACGCTTTTTAAGCCAAAATATGG-AC 50058 || || ||| || ||||| | | ||| | | ||||||| |||||| || | || Sbjct 2818 TCATTACTAAAAGTAAGTCCATGTAATTTATTCT--GTTTTTTAAACCAAAAAATTGCAC 2875 Query 50059 GCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA 50118 ||| ||| | ||| | || ||||| || ||| || |||| ||| ||| || Sbjct 2876 AAAAACTACC-ACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCA 2934 Query 50119 TAACTGGCGCTGT--CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 50176 | || ||| ||| |||||| ||| ||||||| || || || || || | Sbjct 2935 AA--TGAATTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTG 2992 Query 50177 GCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTAT 50236 | || |||| || |||| ||| | || ||| ||| |||||| | |||| ||| Sbjct 2993 GTATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTAT 3052 Query 50237 CGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 50296 | || | | ||| ||| |||| ||||| |||||||| | || || |||||| ||| | Sbjct 3053 CAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAA 3112 Query 50297 AACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC-AGCTAAATTTTCATTC 50355 | | |||| || ||||| || |||||| | |||| | | | ||| |||||||| Sbjct 3113 ATTTTTTAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAAT 3171 Query 50356 ACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG 50415 ||||| || ||||| ||||||||||| || || |||||||| |||||||||||||| || Sbjct 3172 ACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTT 3231 Query 50416 GGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAA 50475 ||| ||| | |||| || | ||| | |||| ||||| |||||| |||||||| Sbjct 3232 TCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAA 3291 Query 50476 AATGATGCCTCTGCCTTTTTATACATATTCCA 50507 |||||||| ||||| |||||||| | || ||| Sbjct 3292 AATGATGCTTCTGCTTTTTTATAAAAATCCCA 3323 >seq1515 Length=1449 Score = 168 bits (186), Expect = 1e-36 Identities = 220/302 (73%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 ||| |||| |||| |||| || || | |||||| |||| || || || ||||||| || Sbjct 594 ATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGC 535 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || ||||| || || | |||| || | || || || ||| | ||||| Sbjct 534 TATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAATTTACT 475 Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399 ||| |||||||| |||||||| ||||| ||||||||||| || || ||||||||||| Sbjct 474 AGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTAT 415 Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATATCTA 50458 |||||||||||| || ||| ||| ||| || || || | ||| | |||| ||||| Sbjct 414 AAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCTA 356 Query 50459 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 50518 |||||| | ||||||||||| || || || |||||||| | |||||| | ||| ||| Sbjct 355 TTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGAT 296 Query 50519 AT 50520 || Sbjct 295 AT 294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718248805192280