Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq598 253 2e-62 seq1515 154 1e-32 >seq598 Length=26426 Score = 253 bits (280), Expect = 2e-62 Identities = 620/925 (67%), Gaps = 21/925 (2%) Strand=Plus/Plus Query 13543 AAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTT 13602 ||||||| | ||| | | | | || ||||| || ||| ||||| ||| ||| | || Sbjct 2447 AAAAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTT 2506 Query 13603 TTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTA 13662 ||||||| ||||| ||||| |||| || || || ||||| ||| ||| |||||| Sbjct 2507 TTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTT 2566 Query 13663 TTGACATAAACACTTTATCA-CAACCTAG---TTCTAATAGTAATCTATCAGCAATAAAC 13718 ||| |||||| | ||| | | ||||||| ||| |||| ||| ||| || | ||| Sbjct 2567 TTG-CATAAAAAATTTTTGAACAACCTAAACATTCCAATA---ATCGATCTGCTACAAAT 2622 Query 13719 TCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTG 13778 || ||||| ||||||||||| ||||||| || |||| | ||| | | ||| Sbjct 2623 TCTATATACTGAGACATTAATCTTGAATTCATCCCAATTAAATCACAAGGTAG-AGATTC 2681 Query 13779 GT-TAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATT 13837 || || | |||| | ||||| ||||| | |||| || ||| || || | Sbjct 2682 ACATATGAAAGATCTTTCAACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTC 2741 Query 13838 AGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAATCACAATGAAGGCCC 13895 | | | |||||| | || | |||||||| |||||| ||| | || Sbjct 2742 TG--GTAATTTATTTTCTAATAAACTATATATTAAACAATTAAAATCTGTATGTAATCCT 2799 Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCATCAATCCTCGtttttt 13954 |||||||||||||| ||||| || ||| || | ||| || || || || ||||||| Sbjct 2800 TCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCATGTAATTTATTCT-GTTTTTT 2858 Query 13955 tAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 |||||||| |||||| ||| || ||| | ||| || ||||| ||| || Sbjct 2859 AAACCAAAAAATTGCACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGC 2918 Query 14015 TATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGA 14074 || | || |||| |||| || | | | || |||||||||| |||||| | Sbjct 2919 TACAATTCTTTCTGCAAATGAATTTGTATCATT---TATCCATTTTGCAGCCCAAAGTGC 2975 Query 14075 tttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGT 14134 ||| || |||| || |||||||||||| |||||||| | |||||| Sbjct 2976 TTTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATC 3035 Query 14135 ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGC 14194 | | || || ||||||||||||| || ||| |||| || ||||||||||| | || Sbjct 3036 ATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGC 3095 Query 14195 TATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTC 14254 ||| ||||| ||||| | ||||||| | ||| ||||| ||||| ||| | Sbjct 3096 TATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCT-TAAAAACTTAC 3154 Query 14255 G-GCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAA 14313 ||||||||||| ||||||||||||||||||||||||||||| || | | ||||| Sbjct 3155 TAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAA 3214 Query 14314 TAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTA 14373 |||| | || || | | || | ||||| |||| |||||| | || | ||||| Sbjct 3215 TAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTA 3274 Query 14374 CTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTAT 14433 ||| ||| |||||||||| || | ||||||||||| | |||| | ||| | Sbjct 3275 TTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATCTGGGT 3334 Query 14434 ATAATATAGGAAAAACTACAAATCT 14458 |||| || ||| | | | |||||| Sbjct 3335 ATAAAATTGGATACAATGTAAATCT 3359 >seq1515 Length=1449 Score = 154 bits (170), Expect = 1e-32 Identities = 248/351 (71%), Gaps = 8/351 (2%) Strand=Plus/Minus Query 14098 TTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAAT 14155 |||||||||||| |||||||| | | |||| || | ||| ||| || ||||||| Sbjct 631 TTTCAATAGCATGAAATAAATTTAACCTCTCCTTCTCATCCTT--AATATAATTATCAAT 574 Query 14156 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCA 14215 | ||| ||||| ||||||||||||| ||||| | |||||| |||||| |||||| Sbjct 573 TAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTT 514 Query 14216 TCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14275 | ||||||| |||||| || ||||| | ||||||||||| ||||| Sbjct 513 TTTAGCTTCAATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTAT 454 Query 14276 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC-TTCATTGT 14334 ||||||||||||||||||||||| || | | ||| ||||| | || || || | | Sbjct 453 TCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATT 394 Query 14335 TGAGTTTTTTCCAA-TCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393 | | |||||| || || ||||| | || | ||||| ||| ||| | |||||||| Sbjct 393 TAA--TTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAAT 336 Query 14394 CTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGA 14444 || ||||||||||||| | ||||| ||| ||||| |||||| Sbjct 335 GAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGATATATAATAGGA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479714645571800