Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq598 241 1e-58 seq1515 140 3e-28 >seq598 Length=26426 Score = 241 bits (266), Expect = 1e-58 Identities = 616/924 (67%), Gaps = 19/924 (2%) Strand=Plus/Plus Query 13331 AAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTT 13390 ||||||| | ||| | | | | || ||||| || ||| ||||| ||| ||| | || Sbjct 2447 AAAAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTT 2506 Query 13391 TTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTG 13450 ||||||||||||| ||||| |||| || || || ||||| ||| || |||||| Sbjct 2507 TTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTT 2566 Query 13451 TTGACATAAACACTTTATCA-CAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCA 13509 ||| |||||| | ||| | | ||||||| | ||||||| ||| || | ||| || Sbjct 2567 TTG-CATAAAAAATTTTTGAACAACCTAAACATTCCAATAATCGATCTGCTACAAATTCT 2625 Query 13510 ATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATT-AGT 13568 ||||| ||||||||||| ||||||| || |||| | ||| | | ||| | Sbjct 2626 ATATACTGAGACATTAATCTTGAATTCATCCCAATTAAATCACAAGGTAG-AGATTCACA 2684 Query 13569 TAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGA 13628 || || | |||| | ||||| || || | |||| | |||| || || | | Sbjct 2685 TATGAAAGATCTTTCAACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTG- 2743 Query 13629 AGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCA 13686 | | |||||| | || | |||||||| |||||| ||| | || ||| Sbjct 2744 -GTAATTTATTTTCTAATAAACTATATATTAAACAATTAAAATCTGTATGTAATCCTTCA 2802 Query 13687 TCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCATCAATCCTCGtttttttAA 13745 ||||||||||| ||||| || ||| || | ||| || || || || ||||||| || Sbjct 2803 TCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCATGTAATTTATTCT-GTTTTTTAAA 2861 Query 13746 CCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 13805 |||||| |||||| || || ||| | ||| || ||||| ||| |||| Sbjct 2862 CCAAAAAATTGCACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTAC 2921 Query 13806 TAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCCATTTTCTAGCCCATTCAGAt 13863 | || |||| |||| || ||||| | || ||||||||| |||||| | | Sbjct 2922 AATTCTTTCTGCAAATGAA-----TTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCT 2976 Query 13864 ttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTA 13923 || || |||| || |||| || |||| ||||||| | |||||| | Sbjct 2977 TTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCA 3036 Query 13924 CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCT 13983 | || || ||||||||||||| || ||| |||| || ||||||||||||| ||| Sbjct 3037 TCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCT 3096 Query 13984 ATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCT 14043 || ||||| ||||| | ||||||||| ||| || || ||||| ||| || Sbjct 3097 ATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCT-TAAAAACTTACT 3155 Query 14044 -GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAAT 14102 ||||| ||||| || |||||||||||||||||||||||||| || | | |||||| Sbjct 3156 AGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAAT 3215 Query 14103 AAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTAC 14162 ||| | || || | | || | ||||| |||| |||||| | || | ||||| Sbjct 3216 AAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTAT 3275 Query 14163 TTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATA 14222 ||| ||| |||||||||| || | ||||||||||| | |||| | ||| || Sbjct 3276 TTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATCTGGGTA 3335 Query 14223 TAATATAGGAAAAACTACAAATCT 14246 ||| || ||| | | | |||||| Sbjct 3336 TAAAATTGGATACAATGTAAATCT 3359 >seq1515 Length=1449 Score = 140 bits (154), Expect = 3e-28 Identities = 247/352 (70%), Gaps = 10/352 (3%) Strand=Plus/Minus Query 13886 TTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAAT 13943 |||| || |||| ||||||| | | |||| || | ||| ||| || ||||||| Sbjct 631 TTTCAATAGCATGAAATAAATTTAACCTCTCCTTCTCATCCTT--AATATAATTATCAAT 574 Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 | ||| ||||| ||||||||||||| ||||| | |||||| |||||| |||||| Sbjct 573 TAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTT 514 Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCT-GCCAAGTTTTCATTAACAA 14062 | ||||||| ||||||||| ||||| || || ||||| ||||| || | Sbjct 513 TTTAGCTTCAATTATTTGTACCTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTA 455 Query 14063 TACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC-TTCATTG 14121 | ||||||||||||||||||||||| || | | ||| ||||| | || || || | Sbjct 454 TTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACAT 395 Query 14122 TTGAGTTTTTTCCAA-TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 || | |||||| || || ||||| | || | ||||| ||| ||| | |||||||| Sbjct 394 TTAA--TTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAA 337 Query 14181 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGA 14232 || ||||||||||||| | ||||| ||| ||||| |||||| Sbjct 336 TGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGATATATAATAGGA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478575477284280