Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq546 376 3e-99 seq598 203 4e-47 seq1515 159 5e-34 >seq546 Length=57643 Score = 376 bits (416), Expect = 3e-99 Identities = 1144/1756 (65%), Gaps = 42/1756 (2%) Strand=Plus/Plus Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 || || |||||||| |||| || |||||||| | ||||| |||| || |||||| Sbjct 4363 TGGTCAATGAAGGCACCCCGATCGGCAGCCATATCGATGATGTTCTTCTGCTTGATTTCC 4422 Query 71002 CAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 71057 |||| ||| || || | ||| ||||| || || | | || ||| ||| | Sbjct 4423 CAAACAGTCTTGTAGAGCTC-CTTAAGGTCGCTAGGTATTTCGCTTATATACTGGACACT 4481 Query 71058 TCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 71117 ||| | ||||||| | ||| || ||||||| ||| | | | || ||| Sbjct 4482 ACCATTGTGAGCAATAAGTTGTTGTTTCATGTCTTCATCCCAGAGTCCACGATCAAATAA 4541 Query 71118 AACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTA 71177 || |||| | ||||||||| || || ||||||||| | |||||| | | ||| Sbjct 4542 GTCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTA 4601 Query 71178 AATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 71237 |||||| || || |||||||| | || ||||| ||||| || || || | ||| ||||| Sbjct 4602 AATATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGC 4661 Query 71238 AGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTT 71297 ||| ||||||||||| | | || |||||| | |||||| | ||||| ||||| Sbjct 4662 AGTAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTT 4721 Query 71298 TAGAGATTC---CCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNN 71354 || ||| |||||||||| | || | |||| Sbjct 4722 AAG---TTCAGTCCAATTCCAATATTT--ATTAT-CAACCTTTATATTCCACATATCAAA 4775 Query 71355 N------ATGCCGTTACTAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407 || || | ||||| | | | ||| |||| | || ||| || | ||| Sbjct 4776 TTGAAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTT 4834 Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| ||| | | |||||||| ||||||| || ||||| ||||| | |||| Sbjct 4835 GAGCTAATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTAT 4894 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 | | |||| |||||| || | ||||| |||| || ||||| | || |||| Sbjct 4895 TTAATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTA 4954 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 ||||||| || ||||| || || ||||| ||||| | || || ||||||||||| || Sbjct 4955 ATCCTTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAA 5014 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 |||||||||||| | ||||||||||| | | |||||| || | ||| | | Sbjct 5015 CAGGATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTT 5074 Query 71648 CCTTTAGTTTGAGAAAATCAAA-----TCTCCCATCTAT-TACAAAC--ACGTTCAAGGC 71699 | | || ||| ||||| ||| | | | ||| |||||| || | || || Sbjct 5075 CATATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACAT--AAAGC 5132 Query 71700 AACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGT 71759 || |||||| | |||||||| || || |||| | | ||||| || |||||| Sbjct 5133 AATAGATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACA 5192 Query 71760 GCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 71819 || ||||||||||| || || || |||||||||| ||||||| || ||||| | Sbjct 5193 ACATAGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGA 5252 Query 71820 ATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 71879 ||| ||||| | ||| | || ||| ||||| || ||| || || ||| || ||| Sbjct 5253 ATCTTTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCA 5312 Query 71880 GACGACTCGAGCCTTTATTATATTCTTGTATCTC---TTTTCTCTTTCGTATTGTGTATA 71936 | || | || || || | | || | || |||||| ||| |||| | ||| Sbjct 5313 TAAATCTTGCGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATA 5369 Query 71937 TAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACAT 71996 |||| ||| || || || ||||| | | ||| || ||||||||||| |||||||| Sbjct 5370 TAATTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACAT 5429 Query 71997 CAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056 |||| ||| | | || || || |||| ||||||||| | ||| || | ||||| ||| Sbjct 5430 TAATGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGC 5489 Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 ||||| |||||| | || || || || || ||| ||| | | ||| || || Sbjct 5490 ATAAAATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAA 5549 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | | ||||| |||||||| ||||| | |||| || | ||| | ||| Sbjct 5550 CTCAAATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCC 5609 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATAC 72235 ||| || ||||||| |||||||| || | ||| ||||||| |||||||| | |||| | Sbjct 5610 TCCACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-C 5668 Query 72236 CATTGGATGCACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTGCTAATT 72294 | || ||| |||||| || || ||||| | | | |||| |||| | | Sbjct 5669 CGTTTGATATACCATTTGTTCCTCTTATATATGAATTTTGTC-CACGTATATCTTGTACT 5727 Query 72295 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354 | || ||| || || ||||| ||||| || || || ||| | ||||| || ||| | Sbjct 5728 GCTACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAA 5787 Query 72355 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 72414 || || || || ||| | |||| |||| |||||| ||||| || | | Sbjct 5788 ATTCCTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTT 5847 Query 72415 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 72474 || || | ||||||||| || || | || || ||||| |||||| |||| ||| Sbjct 5848 GGTGTCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGA 5907 Query 72475 TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATT 72534 | || || || | ||| ||||| ||| | |||||| || | | || | |||| Sbjct 5908 TGATATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATT 5967 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 | || ||| || |||||||| | || || ||||| || ||| || || || |||| Sbjct 5968 ATCAAATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCT 6027 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 72654 || ||||||||||||||||| | || ||| || ||| ||| ||| | ||| Sbjct 6028 AACGTTTTAAAACCAAAATAATCATAATTAAAATCACGTGTATAATCAATCTCTTTATTT 6087 Query 72655 AGTTTATCCTTATATT 72670 | | ||||||||| || Sbjct 6088 AATCTATCCTTATGTT 6103 >seq598 Length=26426 Score = 203 bits (224), Expect = 4e-47 Identities = 590/892 (66%), Gaps = 26/892 (3%) Strand=Plus/Plus Query 41755 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTT 41814 || || |||||| || ||| || || ||| | ||||||||||| ||||| || || || Sbjct 2466 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 2525 Query 41815 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 41874 ||||| | || || ||||| ||| ||| ||||| | ||| | |||||||| Sbjct 2526 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGA 2585 Query 41875 AAATCCCAA---TTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCAT 41931 | | || || ||| ||| |||| |||||| | ||||||||||| ||| | Sbjct 2586 ACAACCTAAACATTCC--AAT-AATCGATCTGCTACAAATTCTATATACTGAGACATTAA 2642 Query 41932 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAAT-TCTTGTTC 41988 | ||||||| || || | | | || |||| |||| || |||| |||| || Sbjct 2643 TCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACA-TATGAAAGATCTT--TC 2699 Query 41989 AATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC---AA 42045 || || || ||| | | |||| | | || |||||| | || || Sbjct 2700 AACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAA 2759 Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105 |||| || | || ||||| ||||| || | || |||||||||||||||| Sbjct 2760 TAAAC---TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAG 2816 Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCA--TTAGGCCACGCTTTTTAAGCCAAAATATAGAC 42163 ||| || ||| || ||||| | | ||| | | ||||||| |||||| || | | Sbjct 2817 TTCATTACTAAAAGTAAGTCCATGTAATTTATTCT--GTTTTTTAAACCAAAAAATTG-C 2873 Query 42164 GCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 42222 |||| | ||| ||| | || ||||| || ||| || | || ||| ||| | Sbjct 2874 ACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGC 2933 Query 42223 ATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 | | | |||| |||||| ||| ||||||| || || || || || || Sbjct 2934 AAATGAATTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGG 2993 Query 42283 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342 || |||| || |||| ||| | || ||| ||| |||||| | ||| |||| Sbjct 2994 TATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATC 3053 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || | | ||| ||| |||||||||| |||||||| | || || |||||| ||| || Sbjct 3054 AATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAA 3113 Query 42403 ACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC-AGCTAAATTTTCGTTCA 42461 | | || || |||| || |||||| | |||| | | | ||| |||||||| | Sbjct 3114 TTTTTTAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATA 3172 Query 42462 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCG 42521 |||| || ||||| ||||||||||| || || |||||||| ||||||| |||||| | Sbjct 3173 CTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTT 3232 Query 42522 GTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAA 42581 ||||||| | |||| || | ||| | |||| ||||| |||||| | ||||||| Sbjct 3233 CATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAA 3292 Query 42582 ATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGG 42633 ||||||||||||| |||||||| | || ||| | ||| | ||| |||||| Sbjct 3293 ATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATCTGGGTATAAAATTGG 3344 >seq1515 Length=1449 Score = 159 bits (176), Expect = 5e-34 Identities = 223/310 (72%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 ||| |||| ||| |||| || || | |||||| |||| || || || ||||||| || Sbjct 594 ATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGC 535 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || ||||| || || | | || || | | ||||| ||| | ||||| Sbjct 534 TATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAATTTACT 475 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 ||| |||||||| |||||||| ||||| ||||||||||| || || ||||||||||| Sbjct 474 AGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTAT 415 Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCAA-TCATTGATATCTTTAGATATATCTA 42563 ||||| |||||| | ||||||| ||| || || || | ||| | |||| ||||| Sbjct 414 AAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCTA 356 Query 42564 CTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGAT 42623 |||||| | ||||||||||| ||||| || |||||||| | |||||| | ||| ||| Sbjct 355 TTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGAT 296 Query 42624 ATTGAATTGG 42633 || ||| || Sbjct 295 ATATAATAGG 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671120517162520