Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq546 125 5e-24 seq380 93.3 3e-14 >seq546 Length=57643 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| ||| ||||| || | || || ||||| |||||||| ||||| | Sbjct 55996 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGAT 56055 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||| ||||| || || || |||| || | ||| || || |||| Sbjct 56056 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGA 56115 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTAC 15315 |||||||| || || |||||| ||| ||| | || |||||||| | || ||| || Sbjct 56116 ATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATC-CGATGATTCAAC 56174 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| | ||| ||||| || ||||||| ||||| ||||| || ||||| Sbjct 56175 ATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 56222 >seq380 Length=37146 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 15164 AGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTG 15223 || ||||| ||||| || || || ||||| ||| | || | | |||||||||||| Sbjct 27403 AGAGTGGATTCTTTCTGGATATTATAATCATTTAAAGTTTTTCCACATTCTAATTGTTTT 27344 Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCT 15282 || || | || || | ||||| |||| |||||| |||| || || |||||| ||| Sbjct 27343 CCTGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCT 27284 Query 15283 CTTTACAATTTCTATGGTATCGCTATT--TTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || | | |||| || ||||| || | ||| || || | || ||| ||||| || | Sbjct 27283 -TTAATATTTTCAATAGTATC--TACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTT 27227 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTG 15368 | ||||||||||| |||||||| |||| Sbjct 27226 AATGTTTTTACAAATATTTGCATTTTTG 27199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362169369890607