Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq546 91.5 9e-14 >seq546 Length=57643 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||||||| || || || ||||| || || || ||||| || || || ||||| || Sbjct 56227 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 56286 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | || |||||||||||||| ||||||||| | |||||| || | ||| Sbjct 56287 AATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 56346 Query 33263 ATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || || ||||| ||||| | | ||| || || | || | Sbjct 56347 ATTCCTTCCTTATCTTGAATTTTCGCC---TTTACATTCTCAATGGTATCCGATGATTCA 56403 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || ||||| || | ||||| || || || ||||| Sbjct 56404 ACATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 56453 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || || || || || || || || ||||| || || || ||||| || Sbjct 55764 ACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGA 55823 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | || |||||||||||||| ||||||||| | |||||| || | || Sbjct 55824 TAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGG 55883 Query 33262 TATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||| ||||| || || || ||||| ||||| | | ||| || || | || Sbjct 55884 TATTCCTTCCTTATCTTGAATTTTCGCC---TTTACATTCTCAATGGTATCCGATGATTC 55940 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || || || || || ||||| || | ||||| || || || ||||| Sbjct 55941 AACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 55991 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||||||| || || || || || || || || ||||| ||||| || ||||| || Sbjct 55996 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGAT 56055 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | || |||||||||||||| ||||||||| | |||||| || | || Sbjct 56056 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGA 56115 Query 33263 ATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || || ||||| || || | | ||| || || | || | Sbjct 56116 ATTCCTTCCTTATCTTGAATTTTCGCC---TTAACATTCTCAATGGTATCCGATGATTCA 56172 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || ||||| || | ||||| || || || ||||| Sbjct 56173 ACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 56222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318768947877846