Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq546 125 5e-24 seq380 96.9 2e-15 >seq546 Length=57643 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||| ||| || ||||||| || ||||| || || |||||||| | Sbjct 56227 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 56286 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| | |||| |||||||| |||||||||||||| || | |||||| || | ||| Sbjct 56287 AATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 56346 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| |||||| |||||| || || | ||| ||||| | | || ||| Sbjct 56347 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACA 56406 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| ||| || || || || || || || ||||||||||| ||||| Sbjct 56407 TCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 56453 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 43893 AACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGT 43952 |||||||||| |||| ||| || || |||| || ||||| || || |||||||| Sbjct 55763 AACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTG 55822 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 |||| | |||| |||||||| |||||||||||||| || | |||||| || | | Sbjct 55823 ATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTG 55882 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 ||| ||||| |||||| |||||| || || | ||| ||||| | | || | Sbjct 55883 GTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAA 55942 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| || || || || || || || || ||||||||||| ||||| Sbjct 55943 CATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 55991 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||| ||| || || |||| || ||||| || || |||||||| | Sbjct 55996 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGAT 56055 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| | |||| |||||||| |||||||||||||| || | |||||| || | || Sbjct 56056 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGA 56115 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| |||||| |||||| || || | ||| ||||| | | || ||| Sbjct 56116 ATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAACA 56175 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || || || || || || || ||||||||||| ||||| Sbjct 56176 TCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 56222 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||| ||| || ||||||| || || ||||| || |||||||| | Sbjct 56458 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTATAATCTAAT 56517 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| | |||| |||||||| |||||||||||||| || | |||||| || | ||| Sbjct 56518 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 56577 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| |||||| |||||| || || | ||| ||||| | | ||| ||| Sbjct 56578 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGACTCAACA 56637 Query 44075 TCGACCGTAATTGTTTTACC 44094 || | || || ||||| || Sbjct 56638 TCCAAGGTGATCGTTTTTCC 56657 >seq380 Length=37146 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAA--TTGACGCTCATCGT 43970 ||||| | || ||| ||||| || ||||||||||| ||||| || | ||| | Sbjct 27412 ACCAAGTTCAGAGTGGATTCTTTCTGGATATTATAATCATTTAAAGTTTTTCCACAT--T 27355 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | ||||||||||||||||| || || | ||| | ||| | || | |||| ||||| Sbjct 27354 CTAATTGTTTTCCTGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCT 27295 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 ||||||| ||| | | ||| ||||||| | | || || || | | |||||||| Sbjct 27294 GAATTTTTGCTTTAATATTTTCAATAGTATCTACTGATTCAACCTCAAGGGCAATTGTTT 27235 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || |||| || || |||||||||||||| Sbjct 27234 TTCCCCTTAATGTTTTTACAAATATTTGCAT 27204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354767970781596