Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq598 235 5e-57 seq1515 123 2e-23 >seq598 Length=26426 Score = 235 bits (260), Expect = 5e-57 Identities = 562/840 (67%), Gaps = 15/840 (2%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||| ||||| || ||| | |||||||||||||||||||||||||| || ||||| Sbjct 2484 TTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAA 2543 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| ||| ||||||||||| | | || | |||| ||| ||||| | || Sbjct 2544 ATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACCTAAACATTCCAA 2603 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 |||| || || ||||| ||||| ||||| |||||| | ||||| || ||||| Sbjct 2604 TAATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGAATTCATCCCAATTAA 2663 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | ||| | || ||| || || | |||| | ||||| ||||| |||| || Sbjct 2664 ATCACAAGGTAGAGATTCACATATGAAAGATCTTTCAACTTCAACAGCTTCTTTAACAAT 2723 Query 13099 GTCTCTTATTACGTTCTCT---AATGGAGGATTTGATAGATGCTTAAACATCATACATGC 13155 | | | | || | ||| ||| | | | ||| | || | || | ||| Sbjct 2724 ATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---TATATATTAAACAATT 2780 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 |||||| || ||||||||||||||||| ||||| || || ||| || || || | Sbjct 2781 AAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCATG 2840 Query 13216 CATAAGCCCTC-GTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 | | || ||||||||| |||||| || ||| ||| ||| ||| | ||| | Sbjct 2841 TA-ATTTATTCTGTTTTTTAAACCAAAAAATTGCACAAAAACTACCACTAAATAGTATAC 2899 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCC 13334 ||||||| |||| |||| | ||||| || | | | ||| || | ||||| Sbjct 2900 CTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAA---TTTGTATCATTTATCC 2956 Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGTTAAAT 13393 | ||| ||||| |||||| | ||||| || | | |||||||| || || | |||| Sbjct 2957 ATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGT-ATATTTTCAATAGCATGAAAT 3015 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 |||| ||| ||| ||| |||||| |||| || | ||| || ||| ||||| Sbjct 3016 AAATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCT 3075 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGA 13513 ||||| || ||||| | |||||||| || ||||| | |||| |||| | ||| Sbjct 3076 GAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGA 3135 Query 13514 ACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 ||||| ||||| ||| || || || ||||| ||||| || |||||||| ||||| Sbjct 3136 ACTTCTCT-TAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAA 3194 Query 13573 aaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGG 13632 ||| || | | || |||||||| | |||||| ||||| || ||| ||||| Sbjct 3195 AAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTT 3254 Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 ||||| |||||||||||| || ||| | |||||||| || || | || || ||||| Sbjct 3255 TAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 3314 >seq1515 Length=1449 Score = 123 bits (136), Expect = 2e-23 Identities = 228/332 (69%), Gaps = 2/332 (1%) Strand=Plus/Minus Query 13373 ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCT 13432 |||||||| || || | |||||||| | ||||| || ||||||| |||| Sbjct 635 ATATTTTCAATAGCATGAAATAAATTTAACCTCTCCTTCTCATCCTTAATATAATTATCA 576 Query 13433 ATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAA 13492 || ||||| ||||| |||| || || |||||||| | |||||||| ||| |||||| Sbjct 575 ATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAAC 516 Query 13493 CATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAAC 13551 | |||| || || || || || ||||| || || || || ||||| || Sbjct 515 TTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATAC 457 Query 13552 TATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC 13611 ||| || |||||||| |||||||| || | | || || ||||| | |||||| ||| | Sbjct 456 TATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTAC 397 Query 13612 TGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 || ||| | ||| ||||| |||||||||||| || ||| | |||||||| Sbjct 396 ATTTAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAA 337 Query 13672 AGAAGCAACAGCCTTCTTATACATCATCCATA 13703 || || |||| || ||||| | |||||| Sbjct 336 TGAGGCTTCAGCTTTTTTATAAAAATTCCATA 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430970702464254