Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq546 174 4e-38 seq380 149 1e-30 seq598 125 2e-23 >seq546 Length=57643 Score = 174 bits (192), Expect = 4e-38 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 ||| ||||||| | |||| |||| |||||| |||||||||||||| || ||||| || | Sbjct 56226 TCCTCCTCTTAATCGTAAG-ACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTG 56284 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||| ||||| || || || | ||| ||||| ||||| |||| || || ||||| || | Sbjct 56285 ATAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTG 56344 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 |||||||||| ||||| ||||| || || |||||||| || | |||||| | ||| | Sbjct 56345 GTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAA 56404 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | || || || || ||||| || || | ||||| ||||||||||||||| Sbjct 56405 CATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56454 Score = 172 bits (190), Expect = 1e-37 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 || ||||||| | |||| |||| ||||| |||||||||||||| || ||||| || || Sbjct 55765 CCTCCTCTTAATCGTAAG-ACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGA 55823 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||||| || ||||| | ||| ||||| ||||| |||| || || ||||| || || Sbjct 55824 TAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGG 55883 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 ||||||||| ||||| ||||| || || |||||||| || | |||||| | ||| || Sbjct 55884 TATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAAC 55943 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || ||||| || || | ||||| ||||||||||||||| Sbjct 55944 ATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 55992 Score = 165 bits (182), Expect = 2e-35 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 ||| ||||||| | |||| |||| ||||| |||||||||||||| || ||||| || | Sbjct 55995 TCCTCCTCTTAATCGTAAG-ACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTG 56053 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||| ||||| || ||||| | ||| ||||| ||||| |||| || || ||||| || | Sbjct 56054 ATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTG 56113 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | |||||||| ||||| ||||| || || || ||||| || | |||||| | ||| | Sbjct 56114 GAATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAA 56173 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | || || || || ||||| || || | ||||| ||||||||||||||| Sbjct 56174 CATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56223 Score = 131 bits (144), Expect = 4e-25 Identities = 132/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 ||| ||||||| | |||| |||| |||||| |||||||| || || || ||||| || Sbjct 56457 TCCTCCTCTTAATCGTAAG-ACTAAATGTAAAGTAGATTCCTTTTGGATGTTATAATCTA 56515 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||| ||||| || ||||| | ||| ||||| ||||| |||| || || ||||| || | Sbjct 56516 ATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTG 56575 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 |||||||||| ||||| ||||| || || |||||||| || | |||||| Sbjct 56576 GTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATC 56624 >seq380 Length=37146 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| |||||||| ||| || |||| | || ||||| ||||||||| Sbjct 27400 GTGGATTCTTTCTGGATATTATAATCATTTAAAGTTTTTCCACATTCTAATTGTTTTCCT 27341 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||||| || |||| || | || ||| |||| ||||||||||| |||||||| Sbjct 27340 GCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCTTTA 27281 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 | |||||| | ||||| | ||| ||||| || | ||| || || || | | |||| Sbjct 27280 ATATTTTCAATAGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAATGTT 27221 Query 104543 TTTACAAATATCTGCATTTT 104562 ||||||||||| |||||||| Sbjct 27220 TTTACAAATATTTGCATTTT 27201 >seq598 Length=26426 Score = 125 bits (138), Expect = 2e-23 Identities = 353/537 (66%), Gaps = 4/537 (1%) Strand=Plus/Minus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 || || |||||||| | |||||| ||||| | || ||| |||| ||||| |||| Sbjct 3299 GCATCATTTTGGACAGCTGAAGAAATAGATTTATCAAGTGATTTAAAAGATTTTGAAAAA 3240 Query 268820 TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGAT 268879 ||||| | | |||| | ||||| || || | || |||||||||| ||||||| Sbjct 3239 TTAAATGAAAATGAAAAACATTTTATTAAACATGTTTTAGCATTTTTTGCAGCTAGTGAT 3180 Query 268880 GGTATCGTTAACGAAAATCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGC 268938 ||||| || |||||| | | ||| ||||| | ||| || || ||| | ||||| Sbjct 3179 GGTATAGTATTAGAAAATTTGGCTAG-TAAGTTTTTAAGAGAAGTTCAAATTACAGAAGC 3121 Query 268939 CAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCT 268998 | | |||||| ||| || ||||| ||||||| || |||||||| | ||||||| | Sbjct 3120 TAAAAAATTTTACTCATTTCAAATAGCAGTAGAAAACATACATTCAGAAACGTACAGTTT 3061 Query 268999 ATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAG 269058 | | || |||| ||||||| | ||| | || ||| || ||||| | |||| Sbjct 3060 ACTTATTGATAATTATATAAAAGATGATAAAGAACGTTTAAATTTATTTCATGCTATTGA 3001 Query 269059 AACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGC 269118 || ||| || | || ||| | |||||| ||||||||||| |||| Sbjct 3000 AAATATACCAGCAGTTAAGAATAAAGCACTTTGGGCTGCAAAATGGATAAATGATACAAA 2941 Query 269119 GCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTC 269178 | | | |||||| | || || ||| ||| ||||||||| | ||| || Sbjct 2940 TTCATTTGCAGAAAGAATTGTAGCAAATGCATGTGTTGAAGGTATACTATTTAGTGGTAG 2881 Query 269179 TTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCA-GGATTAACTTTCTCTA 269237 |||| || || |||||||| || |||| || || || ||| | ||||| || Sbjct 2880 TTTTTGTGCAATTTTTTGGTTTAA-AAAACAGAATAAATTACATGGACTTACTTTTAGTA 2822 Query 269238 ACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTA 269294 | ||| | || || || || ||||| ||||| || || ||||||| ||| || Sbjct 2821 ATGAACTAATTAGTAGAGATGAAGGATTACATACAGATTTTAATTGTTTAATATATA 2765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151365546645716